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icebert / eccDNA_RCA_nanopore

eccDNA identification from nanopore long reads of rolling-circle amplicon
MIT License
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problems with an empty variant call file and an info file filled with all zero values #7

Open BBBlanca opened 11 months ago

BBBlanca commented 11 months ago

Hi eccDNA_RCA_nanopore team,

Thanks for developing such an useful tool. I might have a general question about two empty output files. First, in the sequence info file, the values for all columns are zero, including Nfullpass, Nfragment, refLength, seqLength, and fragments. Second, the variant call file is also empty. I am wondering if you have any clue of what caused this problem?

Thank you in advance! Yue

icebert commented 11 months ago

Hi Yue,

I guess it may be due to the data. You may try with the example data and test whether the outputs are all 0.

https://doi.org/10.6084/m9.figshare.17046158.v1

Best,

Meng