Internal error jkOwnLib/trans3.c 71

[NullModel]

Please note source files for this example available at: https://genome-test.gi.ucsc.edu/~hiram/pblat/

Tried command: time ./pblat -threads=2 -noHead -q=rnax -t=dnax -mask=lower \ GCF_901000725.2_fTakRub1.2.2bit refSeqMrna.fa \ GCF_901000725.2_fTakRub1.2.xenoRefGene.psl

Failure: `Loaded 384126662 letters in 128 sequences Blatx 128 sequences in database, 237906 files in query Internal error jkOwnLib/trans3.c 71

real 591m4.026s user 1085m0.023s sys 16m38.805s `

See example files: `-rw-rw-r-- 1 997165206 Aug 9 2019 refSeqMrna.fa

-rw-rw-r-- 1 109199773 Jan 15 07:10 GCF_901000725.2_fTakRub1.2.2bit

-rwxrwxr-x 1 1062472 May 1 15:28 pblat

-rw-rw-r-- 1 171 May 3 12:27 run.sh

-rw-rw-r-- 1 182 May 3 12:28 run.log `

Running on system:

`file pblat

pblat: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.32, BuildID[sha1]=980da6786dfd0811359b238fa0e4c1d955ece3b1, not stripped `

[NullModel]

Can anyone duplicate this issue ?

[icebert]

Thank you very much for the feedback. I fixed this in the new release. Please compile with the latest code or install with bioconda.