Segmentation fault core dumped on large genome

icebert / pblat

parallelized blat with multi-threads support

http://icebert.github.io/pblat/

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Segmentation fault core dumped on large genome #15

Open pan-genome opened 4 years ago

pan-genome commented 4 years ago

in one of the closed issue says the Seg fault issue is fixed on v2.5 but I am still getting it on a 14gb genome: pblat -threads=6 -noHead -fastMap -tileSize=12 -ooc=4461.ooc -minScore=100 -minIdentity=98 source.fa chunk_08.fa chunk_08.fa.psl Loaded 14547261565 letters in 22 sequences Segmentation fault (core dumped)

liaochen1988 commented 3 years ago

I had exactly the same problem.