Closed GoogleCodeExporter closed 9 years ago
Original comment by markpayn...@gmail.com
on 27 Oct 2011 at 3:04
Original comment by markpayn...@gmail.com
on 2 Nov 2011 at 2:53
Clarification.
At the moment there are two accessor functions, obs_var(), and catchabilities()
that work on an FLSAM object to return a data.frame with the estimates of the
correspond parameters e.g.
library(FLSAM)
data(NSH.sam)
catchabilites(NSH.sam)
These functions work by looking at the <FLSAM>@ctrl@catchabilities slot to work
out how to map the parameters fitted to the individual survey-at-age values ie
via the bindings matrix.
The problem is that the current setup can returns the values for numbers-at-age
surveys. We also need to return it for SSB surveys. This is a relatively simple
modification to the code to extract the catchabilities and observation errors
for the SSB indices, in addition to the numbers at age.
Original comment by markpayn...@gmail.com
on 2 Nov 2011 at 3:34
Original comment by markpayn...@gmail.com
on 4 Nov 2011 at 8:02
Original comment by markpayn...@gmail.com
on 4 Nov 2011 at 8:07
This is a bit tricky at the moment, as there is no uniformity in the way that
the indices are specified in the configuration file. I'm not sure I can do this
correctly, and would prefer Anders to unify the interface a bit.
At the moment, the easiest solution is to push it out into the future...
Original comment by markpayn...@gmail.com
on 4 Nov 2011 at 3:08
Original comment by markpayn...@gmail.com
on 4 Nov 2011 at 3:09
Original comment by markpayn...@gmail.com
on 8 Nov 2011 at 3:38
Implemented around about revision 1410 somewhere
Original comment by markpayn...@gmail.com
on 9 Nov 2011 at 9:39
Original issue reported on code.google.com by
markpayn...@gmail.com
on 27 Oct 2011 at 2:08