findAssessmentKey - error

[stjanifani]

When running findAssessmentKey() is called it gives the following error:

icesSAG::findAssessmentKey(2019) Error in grepl(EmDash, stock) : regular expression is invalid in this locale

The error is due to: EmDash <- rawToChar(as.raw(150)) rawToChar(as.raw(150)) needs to be replaced with "\u2013".

So it will be: EmDash <- "\u2013"

[colinpmillar]

thanks! we had quite a bit of trouble with this one, can you try running:

  stock <- "whi\x96there"
  if (any(grepl("\\x96", stock))) {
    warning("Please check stock names for 'long dash' ", "\x96", " and replace with -")
    stock <- gsub("\\x96", "-", stock)
  }

and see if it runs ok? Thanks

[stjanifani]

Hi Colin,

No, this does not work

I got this script running by doing this and delete the old EmDash line for:

EmDash <- "\u2013"

Kristján

Kristján Kristinsson, fiskifræðingur / Fisheries Scientist Botnsjávarsvið / Demersal Division Hafrannsóknastofnun, rannsókna- og ráðgjafastofnun hafs og vatna / Marine and Freshwater Research Institute, Skulagata 4, P.Box 1390, 121 Reykjavik, Iceland Tel.: +354 575 2091 kristjan.kristinsson@hafogvatn.is

---

Frá: Colin Millar notifications@github.com Sent: fimmtudagur, 3. september 2020 10:38 Til: ices-tools-prod/icesSAG icesSAG@noreply.github.com Afrit: Kristján Kristinsson kristjan.kristinsson@hafogvatn.is; Author author@noreply.github.com Efni: Re: [ices-tools-prod/icesSAG] findAssessmentKey - error (#204)

thanks! we had quite a bit of trouble with this one, can you try running:

stock <- "whi\x96there" if (any(grepl("\x96", stock))) { warning("Please check stock names for 'long dash' ", "\x96", " and replace with -") stock <- gsub("\x96", "-", stock) }

and see if it runs ok? Thanks

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[colinpmillar]

Okay doke - I have made a fix and will pull into the master shortly, Thanks!

[colinpmillar]

should be fixed now - let me know if it works ok for you - we will update the CRAN version next week, thanks for posting the issue! Colin