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icgc-argo
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argo-data-submission
Workflow to submit genomic data to ARGO RDPC for processing
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Update score container version from 5.10.0 to 5.11.0
#99
edsu7
opened
3 weeks ago
0
Missing optional fields from pGen
#98
edsu7
opened
1 month ago
0
Argo data submission wf@1.2.0
#97
edsu7
closed
5 months ago
1
Fix JSON payload object handling
#96
edsu7
closed
4 months ago
2
Update DEV and QA clinical url values
#95
edsu7
closed
4 months ago
1
Argo data submission wf@1.1.0
#94
edsu7
closed
9 months ago
0
Argo data submission wf@1.0.4
#93
edsu7
closed
9 months ago
1
Update the song/score URLs in configuration file for RDPC Prod/QA/Dev cutover to Cumulus
#92
lindaxiang
closed
9 months ago
2
Print the validation report from `seq-tools` in the end
#91
lindaxiang
opened
1 year ago
0
Argo data submission wf@1.0.3
#90
edsu7
closed
1 year ago
0
Validate seqtools@0.1.9
#89
edsu7
closed
1 year ago
0
Add step in sanity check to verify consistent studyID in params and experiment.tsv
#88
edsu7
opened
1 year ago
0
Force mandatory usage of profiles
#87
edsu7
closed
9 months ago
1
Add non-committal run
#86
edsu7
closed
9 months ago
1
Sanity check@0.1.3
#85
edsu7
closed
1 year ago
0
Validate seqtools@0.1.8
#84
edsu7
closed
1 year ago
0
Bump `validate-seqtools`
#83
edsu7
closed
1 year ago
1
Sanity check@0.1.2
#82
edsu7
closed
1 year ago
0
Add check to verify existence of `matchedNormalSubmitterId`
#81
edsu7
closed
1 year ago
2
Payload json to tsvs@0.1.2
#80
edsu7
closed
1 year ago
0
update dict and template
#79
lindaxiang
closed
1 year ago
0
Update data submission workflow to reflect the dictionary changes in `experiment`
#78
lindaxiang
closed
1 year ago
3
Update molecular metadata dictionary and template
#77
lindaxiang
closed
1 year ago
1
Argo data submission wf@1.0.2
#76
edsu7
closed
1 year ago
2
Score parameters not being passed correctly
#75
edsu7
closed
1 year ago
1
Add params `--force` to let the song-score-upload to overwrite the previously uploaded objects
#74
lindaxiang
closed
1 year ago
2
Miss to catch the invalid value in schema validation
#73
lindaxiang
closed
1 year ago
1
loose the output file type restriction in tool sanityCheck
#72
lindaxiang
opened
1 year ago
0
[wfpm v0.8.0] started a new version argo-data-submission-wf@1.0.1 fro…
#71
edsu7
closed
1 year ago
0
Update read_groups_dict.tsv
#70
edsu7
closed
1 year ago
0
Argo data submission wf@0.3.2
#69
edsu7
closed
1 year ago
0
Validate seqtools@0.1.7
#68
edsu7
closed
1 year ago
0
Validate seqtools@0.1.6
#67
edsu7
closed
1 year ago
1
Update seq-tools
#66
edsu7
closed
1 year ago
1
On-fly Md5sum and filesize generation
#65
edsu7
closed
1 year ago
1
Download aspera@0.1.3
#64
edsu7
closed
1 year ago
0
Ega download wf@0.1.6
#63
edsu7
closed
1 year ago
0
Decrypt aspera@0.1.2
#62
edsu7
closed
1 year ago
1
🐛 `Decrypt-aspera` add renaming
#61
edsu7
closed
1 year ago
1
Sanity check@0.1.1
#60
edsu7
closed
1 year ago
0
🐛 Sanity check failure
#59
edsu7
closed
1 year ago
3
Argo data submission wf@0.3.1
#58
edsu7
closed
1 year ago
1
Ega download wf@0.1.5
#57
edsu7
closed
1 year ago
0
Download pyega3@0.2.0
#56
edsu7
closed
1 year ago
0
Update pyega3 to latest version and add `--connections`
#55
edsu7
closed
1 year ago
2
Fix Docker - Mount Song/Score log folder to container work folder
#54
puneet-oicr
closed
1 year ago
3
Submission receipt@0.1.0
#53
edsu7
closed
1 year ago
0
Feature Request - add step to generate receipt for successful submission
#52
lindaxiang
closed
1 year ago
2
Feature Request - add support to singularity
#51
lindaxiang
closed
1 year ago
3
Argo data submission wf@0.3.0
#50
edsu7
closed
1 year ago
1
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