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icgc-argo / argo-dictionary

Development of the ARGO Data Dictionary
https://docs.icgc-argo.org/dictionary
GNU Affero General Public License v3.0
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Feature Request: Update references source terminology #218

Closed hknahal closed 3 years ago

hknahal commented 3 years ago

If a clinical field in the ARGO dictionary has a reference to a common data element in the caDSR CDE Browser (https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search), it has been indicated in the description of the field using NCI CDE <public identifier>. For example: (Codelist reference: NCI CDE: 4122391) is used in description of laterality_of_prior_malignancy. However, after looking at other dictionaries/references, the prefix used should look like this instead: caDSR CDE ID: 4122391 (caDSR stands for Cancer Data Standards Registry and Repository). Will update the source/references in ARGO dictionary where applicable

hknahal commented 3 years ago

This is done: https://github.com/icgc-argo/argo-dictionary/pull/225

rosibaj commented 3 years ago

Deployed in dictionary 1.7.