Implement the Dashboard Filter: Mutect 2

icgc-argo / platform-api

https://api.platform.icgc-argo.org/graphql

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Implement the Dashboard Filter: Mutect 2 #450

Closed rosibaj closed 3 years ago

rosibaj commented 3 years ago

Specs

Filter should allow free text typing. No autocomplete or interaction.
User can select from the values Completed, In Progress, Failed, No Data
Completed = aligned > 0
Failed = failed > 0
In Progress = in progress > 0
No Data = all of the above three = 0

Implementation

should mimic the other wf columns (alignment)

Buwujiu commented 3 years ago

Feature is implemented under this pr: https://github.com/icgc-argo/platform-api/pull/455

Buwujiu commented 3 years ago

Please refer to this query for added filter:

programDonorSummaryEntries (
    programShortName: "ROSI-RU",
    sorts:{
      field:donorId, order: asc
    },
    filters: [
       {
        field: mutectStatus
        values: ["IN_PROGRESS", "COMPLETED", "FAILED", "NO_DATA"]
      }
]
  ) {

    donorId
    submitterDonorId
    programShortName
    submittedCoreDataPercent
    registeredNormalSamples
    registeredTumourSamples
    publishedNormalAnalysis
    publishedTumourAnalysis
    releaseStatus
    sangerVcsCompleted
    sangerVcsRunning
    sangerVcsFailed
    mutectCompleted
    mutectRunning
    mutectFailed

  }
}

rosibaj commented 3 years ago

@Buwujiu i tested this out and had an issue with the COMPLETED filter and see an issue :

rosibaj commented 3 years ago

confirmed on prod release September 02, 2021