Add File Entity Page to Platform.

[rosibaj]

• [x] Create the File page Routing in the Platform

• [x] Link from the Object Id column on the File repository to the entity page

• [x] Integrate the components of the page into the platform. The UI has been built already in storybook: https://argo-ui-storybook.netlify.app/?path=/story/components-pages-file-entity--basic Zeplin: https://zpl.io/VYgdOOw

[ciaranschutte]

is this still part of the File Repository? If so it should have a similar url to the submission eg. repository/program/file also File Repository in the navbar should remain in selected state

[rosibaj]

@ciaranschutte no its not part of the file repository. Donrs/Programs/Files should be their own entity, like so:

https://platform.icgc-argo.org/file/FI12533 would be the URL path to resolve.

[ciaranschutte]

@ciaranschutte

FileID

file {
    hits(filters: $filters) {
      total
      edges {
        node {
          analysis {
            experiment {
              experimental_strategy
              platform
            }

            workflow {
              workflow_name
              workflow_version

            }
            analysis_type
            analysis_version
            variant_class
          }

data analysis [data type, genome build, software, workflowType: get(entity, 'analysis.workflow') ]

[rosibaj]

@ciaranschutte i said fileID, but we don't have that yet so you can use objectID

[rosibaj]

@ciaranschutte any chance to getting this to QA today?

[ciaranschutte]

Which users can see the page? Which users can download a file?

[ciaranschutte]

needs dev / qa env update

[rosibaj]

@ciaranschutte looks good a couple things:

• [ ] field updates

[ciaranschutte]

@rosibaj @joneubank Do we have program_shortcode available from gateway? I only see short code in the queries.

I believe it should be added to the file query as it only has the shortname displayed here already and needs to remain an unauthenticated endpoint for file repo.

[joneubank]

right now we only have this in the program service, it is not available to query by the UI. We should put some thought into how we want to make this kind of program specific info available in more places.

[rosibaj]

ok @ciaranschutte you can just leave it showing the study-id/shortcode as it is showing now for that feeedback then.