gql `clinicalData` query not returning results

[ciaranschutte]

clinicalData gql query not returning results

possible source of issue is here in the mongoose filtering: https://github.com/icgc-argo/argo-clinical/blob/develop/src/clinical/donor-repo.ts#L256

    const result = await DonorModel.paginate(
      {
        programId,
        ...completionState,
        ...searchQuery,
      },
      {
        projection,
        sort,
        page,
        limit,
      },
    );

completionState is being spread but it's a string resulting in {0: 'a', 1:'l', 2:'l'}

[demariadaniel]

See ClinicalApi: https://github.com/icgc-argo/argo-clinical/blob/develop/src/clinical/api/clinical-api.ts#L204

CompletionState string sent by API is then used to access a key on completionFilters which yields an object Obviously something is not connected right however based on the Mongoose.find() screenshot

Assuming this is RDPC UI -> RDPC Gateway? Starting point to review is clinicalData resolver at: https://github.com/icgc-argo/argo-clinical/blob/develop/src/schemas/clinical-resolvers/clinicalData.ts

[demariadaniel]

Two additional bugs addressed in PR:

• Prevents error if 'sort' field is empty in query filters
• Handles errors where requested clinicalError schema not found in data dictionary