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Place to review/request new features and new tools on ICGC-ARGO's roadmap
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DR11 - RNA-Seq Alignments #1176

Open edsu7 opened 2 months ago

edsu7 commented 2 months ago

Spread sheets to track RNA seq alignment processing: https://docs.google.com/spreadsheets/d/1M-e0tpis_YiZ5avCtppifIr1_pvXb7dhDJJoHs7L120/edit?gid=2122588514#gid=2122588514

edsu7 commented 6 days ago
donorId workflow sampleId runId analysisId notes
DO252185 RNA Seq Alignment SA618040 wes-4f95c7d3bd104ee8ac379ac54ca7bee4 afb0899a-390c-4d25-b089-9a390c0d2512;9e3937cd-71e5-40d2-b937-cd71e5e0d2c7;a0c35e15-9562-478b-835e-159562f78bfa;3e9bf39a-27ba-494a-9bf3-9a27bab94a1a;4a89606f-7536-4848-8960-6f7536a84818;304c2bcd-e49b-4706-8c2b-cde49b9706fb;d32286c1-82d6-406b-a286-c182d6806bde;90550ba7-2b51-43ba-950b-a72b51c3bae0;d0200978-3876-4c46-a009-783876ac46a8 keep
DO252185 RNA Seq Alignment SA618040 wes-a118105c697744ca916b9af0ec126ae8 459c67c4-f784-49f7-9c67-c4f784b9f710;51c6a437-af02-45a5-86a4-37af0225a51b terminated during upload - unpublish
DO252263 RNA Seq Alignment SA616939 wes-370d856d6e964f899840e8eb489564f3 89acd68b-f9e3-4c40-acd6-8bf9e31c401b;2df72487-34a1-45e2-b724-8734a135e2c0;113f1845-c8ef-48b3-bf18-45c8ef18b3eb;07fd19a2-120e-4313-bd19-a2120e431338;db061094-6682-471d-8610-946682871d8c;b73d766a-236e-4d93-bd76-6a236e6d934d;fc4154ad-418c-4a16-8154-ad418c7a16d0;63b3fa76-9091-4e20-b3fa-7690911e20f6;acfd939d-d90f-4396-bd93-9dd90f23966c keep
DO252263 RNA Seq Alignment SA616939 wes-e8a42b0421854218855f769dde17d471 e8c0987e-741c-47fc-8098-7e741c07fc79;10be37e9-66d3-49e1-be37-e966d379e17a;a74a2e03-d286-4c67-8a2e-03d2865c6720;8d3e9c69-cf7f-4092-be9c-69cf7f209294;f9a2f6d4-2482-4f56-a2f6-d42482ff568a;87619558-76ac-41b4-a195-5876ac91b400;0df8f1e2-c6fb-44c0-b8f1-e2c6fbf4c07e;cfd50ab2-a37c-46fd-950a-b2a37cf6fdd1 terminated during upload - unpublish
DO252267 RNA Seq Alignment SA616990 wes-2b82caffa19144bba798e17d217b61b5 31b97caf-7d16-4ea3-b97c-af7d165ea32e;68bfd082-6229-4b47-bfd0-8262294b477c;e063154f-1e3d-4f93-a315-4f1e3d6f9378;1d5e0995-344b-44fc-9e09-95344b94fc18;729eb5c0-0e88-4a8b-9eb5-c00e88aa8ba0;37377125-0a14-4cac-b771-250a149cac48;bef0baea-d1a1-4b17-b0ba-ead1a17b17f0;9c7f6727-7cfd-4820-bf67-277cfd3820df;0c07a582-302e-40e6-87a5-82302ee0e61c keep
DO252267 RNA Seq Alignment SA616990 wes-127b45528fbb47cfa773463747e2d416 cf2815f2-10d6-447e-a815-f210d6647e5b;3415aff7-4569-48e3-95af-f7456968e349;63616288-2913-404d-a162-882913104d82;c7960db3-e036-4dec-960d-b3e0367dec27 terminated during upload - unpublish
DO252275 RNA Seq Alignment SA616980 wes-0939e852322846b1bddce64b636ab429 cc09c319-76c9-4201-89c3-1976c9d201f5;0e19a3bb-5ca1-4131-99a3-bb5ca181312a;b2fb5fbe-7700-4878-bb5f-be77002878c0;642f6365-9d08-484a-af63-659d08f84ac1;aa264551-f4e8-4449-a645-51f4e8e449a3;306b15cd-6cfb-4153-ab15-cd6cfbe15351;037a1209-2cd5-42ed-ba12-092cd5b2eddd;8e0f0906-104f-4999-8f09-06104fc999ff;4d767994-ba92-468e-b679-94ba92668e7c keep
DO252275 RNA Seq Alignment SA616980 wes-a831f3c0f25e4669a043b2361ef9a893 7fe7886b-48e5-4857-a788-6b48e5c8574a;cf2e778d-1714-4be3-ae77-8d17149be38b;aa63babb-61c3-4af3-a3ba-bb61c3eaf3aa terminated during upload - unpublish
DO252402 RNA Seq Alignment SA616949 wes-0033f4aab26442158f51687e3528e373 6bd46660-0299-40e2-9466-60029920e2d4;684a71cd-f535-48ea-8a71-cdf535b8ea05;13538c83-4cda-4f00-938c-834cdadf00f0;7225e326-0396-457f-a5e3-260396457f41;f3828b51-bcd2-49b5-828b-51bcd209b5c2;72ad37fe-b192-4393-ad37-feb192039386;1130b44d-8f5d-4732-b0b4-4d8f5d973299;e5daa5e0-6760-4769-9aa5-e06760976905;fa4372e4-829b-4091-8372-e4829b3091b5 keep
DO252402 RNA Seq Alignment SA616949 wes-2ecbdc53a5f44b96be11d57e7b44cba3 4bba14b8-3b3c-4f6d-ba14-b83b3c9f6d10;20d02fd0-548d-4efe-902f-d0548d1efefc;295ef1f2-7341-4b01-9ef1-f273417b016c;4fafc8e9-5486-4321-afc8-e95486f32168;89fe59f3-1cf2-45b1-be59-f31cf285b198;a9693a15-0fcf-4101-a93a-150fcf7101ed;97f18dc2-54ba-427c-b18d-c254ba927c2c terminated during upload - unpublish
DO252611 RNA Seq Alignment SA617985 wes-badfd735ab63483bb256cfd44a170a2d 08cafc6d-8cf4-4f46-8afc-6d8cf46f46a8;ebb6aee1-66c7-4d93-b6ae-e166c7fd9347;4ed228d8-5f81-40d9-9228-d85f81b0d9fc;93b5d0dd-c74e-4a98-b5d0-ddc74eca981d;75fa8ad9-d788-47f6-ba8a-d9d78877f6f6;6e98617d-7a08-463a-9861-7d7a08b63a18;958faa74-89f6-40a0-8faa-7489f610a082;18bc64f1-eee8-458c-bc64-f1eee8458cdc;2258e74e-70e1-4a2b-98e7-4e70e1ca2b6b both okay keep one
DO252611 RNA Seq Alignment SA617985 wes-30f1089651ca4ff582f5bd1b5bd9bf7c 2068ae3e-7b92-4298-a8ae-3e7b92029842;2abb6679-dd7f-4fa6-bb66-79dd7f9fa6dd;32f90bcf-9f16-4cda-b90b-cf9f16ccda17;72e59103-42db-4dab-a591-0342dbedab35;eb9996e3-22fb-4cc4-9996-e322fbdcc458;a25fd7a6-a964-499a-9fd7-a6a964199aea;cfad40af-3bb6-4758-ad40-af3bb62758d3;9ece0630-38f5-4c7a-8e06-3038f5ac7a12;36e80c0c-0bfa-4278-a80c-0c0bfa4278c1 both okay keep one