initial commit and fix to c609 - Githubissues

icgc-argo / seq-tools

Command line tools for ARGO sequencing data validation

https://github.com/icgc-argo/seq-tools

GNU Affero General Public License v3.0

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initial commit and fix to c609 #99

Closed edsu7 closed 2 years ago

edsu7 commented 2 years ago

See https://github.com/icgc-argo/argo-data-submission/issues/40

fixed c609's regex; added escape character to '\'
added support for nested cram fileMd5sum and fileSize
added affiliated files needed for test
added test cases anon_chr1_cram.valid and anon_chr1_cram.invalid
updated older expected reports to reflect c685

edsu7 commented 2 years ago

Created PRs as per Linda's suggestionL https://github.com/icgc-argo/seq-tools/pull/100 https://github.com/icgc-argo/seq-tools/pull/101