Get Matched Tumour/Normal Pairs by Donor ID

[joneubank]

Add a query that takes donorId as input and returns an array of matched tumour/normal pairs for that Donor.

[jaserud]

Unexpected behavior observed with this query in qa:

query { sampleMatchedAnalysesForDonor(
  req: {
    donorId: "DO262418",
    analysisType: "sequencing_experiment"
  }
) {
    normalSampleAnalysis{
      analysisId
      studyId
      analysisType
      analysisState
      donors {
        donorId
        submitterDonorId
      }
    }
    tumourSampleAnalysis{
      studyId
      analysisId
      analysisType
      analysisState
      donors {
        donorId
        submitterDonorId
      }
    }
  }
}

Query matched samples across studies and with different donorIds:

There is bad data here, but the query should filter the pairs to match the sampleId and donorIds. Also add optional studyId to filter pairs matched across studies.

[jaserud]

Add sampleType to request and add constraint to check sampleTypes are equal for matching samples. https://github.com/icgc-argo/song-search/pull/75

[jaserud]

some legacy analyses use library_strategy instead of experimental_strategy. Need to check the values match for both of these fields.

[b-f-chan]

Released to prod, closing