Open edsu7 opened 1 year ago
@edsu7 FYI, the following are some of the test datasets we've used for various workflows:
In progress, finishing up QA (RNA-Seq specifically). and then moving onto Dev
RNA-Seq will require more time to implement
Consensus approach with bioinfo --> Suppress incorrect raw reads, then re-submit new dummy data that has the correct relationships so they reflect properly on ARGO platform
In weird state, initial issue was dummy data did not have correct matched normals, so uploaded the fixes and suppressed the old ones. New ones are reflected in QA/Dev yet the old suppressed tumours still showing up as well. May need investigation into the indexing.
As for actual synthetic data, still in progress of getting the RNA Seq data in, doing some debugging!
To be looked at this week
Gradually coming along, not top priority
Planning to submit this data onto QA sometimes this week
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Determined that
DATA-CA
program was mainly for clinical. Uploaded molecular data was to help visualization on dashboard. A more comprehensive set is needed for workflow testing.Seq-CA
program on QASeq-CA
program on devSeq-CA
with clinical data on QASeq-CA
with clinical data on dev