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icgc-argo / workflow-roadmap

Roadmap and management for genomic data processing
GNU Affero General Public License v3.0
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QC pipeline Dev - pre alignment QC workflow in nf-core framework #317

Closed lindaxiang closed 2 months ago

lindaxiang commented 1 year ago

wfpm version: https://github.com/icgc-argo-workflows/pre-alignment-qc

puneet-oicr commented 1 year ago

In progress, partly completed

puneet-oicr commented 1 year ago

Ongoing work.

puneet-oicr commented 1 year ago

Implementation complete. Documentation pending. PR to be created soon.

lindaxiang commented 1 year ago

New git repo: https://github.com/icgc-argo-workflows/prealnqc

edsu7 commented 1 year ago

Test on RDPC. Dependency on up to date nextflow ver. https://github.com/icgc-argo/workflow-management/issues/196

lindaxiang commented 9 months ago

Test the workflow in RDPC-QA and got an issue: https://github.com/icgc-argo/workflow-roadmap/issues/388

lindaxiang commented 9 months ago

Test the workflow in RDPC-QA and completed successfully: https://wes.rdpc-qa.cancercollaboratory.org/runs/wes-c6f9a8842bcd48c4a5430384f6fb8e98

lindaxiang commented 7 months ago

Next steps:

justincorrigible commented 2 months ago

Closing as Done