Open edsu7 opened 1 year ago
Re-running alignments to benchmark results Analyses will be saved to QA
study_id | sampleId | submission analysisId | qc_metrics analysisId | sequencing_alignment analysisID |
---|---|---|---|---|
MUTO-INTL |
SA626533 |
4fe73219-8af7-4d61-a732-198af7dd6151 |
d267c1a5-2862-464c-a7c1-a52862464c69 |
28e10fbf-d687-45e7-a10f-bfd68775e7b3 |
MUTO-INTL |
SA626532 |
fee8e2e5-b646-4da3-a8e2-e5b6462da3a7 |
77ce5181-8395-49bb-8e51-81839519bb15 |
3f93bafc-affd-455f-93ba-fcaffd055f48 |
OCCAMS-GB |
SA607699 |
003c2b59-3ff3-4214-bc2b-593ff3121409 |
626caf7d-d5a3-4f37-acaf-7dd5a3ef3708 |
b8231347-2568-436f-a313-472568f36ff6 |
OCCAMS-GB |
SA607698 |
220fe31f-c59d-4773-8fe3-1fc59d577359 |
d7eefe63-9768-402d-aefe-639768c02dc4 |
67f53e8f-f666-4e49-b53e-8ff666be4973 |
APGI-AU |
SA410795 |
2c755f62-1929-41a6-b55f-62192991a6bb |
6eed7544-c292-4560-ad75-44c292e56012 |
2aa2c0ce-bf88-47fc-a2c0-cebf8817fc62 |
APGI-AU |
SA410803 |
e2131db5-cf23-468f-931d-b5cf23568fe5 |
2a4682ff-ab3b-4844-8682-ffab3b884480 |
d4cc4774-061a-45a6-8c47-74061ad5a669 |
PACA-CA |
SA600959 |
2529fa5a-efd8-46ec-a9fa-5aefd856ec9c |
3f2c443e-c890-4b8d-ac44-3ec890ab8dd1 |
7fe39382-28db-4680-a393-8228db26802d |
PACA-CA |
SA600960 |
2f0df339-1182-4135-8df3-391182b135a0 |
8615330f-fb18-45ec-9533-0ffb1835ecf9 |
69d5e304-0a3e-45de-95e3-040a3e95de0c |
LUCA-KR |
SA520548 |
02839a76-4c01-478e-839a-764c01f78e02 |
169e6343-b85d-4386-9e63-43b85d738611 |
f2e593e9-8bdb-4f0c-a593-e98bdb2f0c19 |
LUCA-KR |
SA520549 |
04729a68-0ad6-47f5-b29a-680ad627f53d |
94707a01-9291-450e-b07a-019291c50e8c |
5db628a5-4e2d-4be5-b628-a54e2d6be5ef |
study_id | sampleId | BWA qc_metrics analysisId | BWA sequencing_alignment analysisID | BWAmem2 qc_metrics analysisId | BWAmem2 sequencing_alignment analysisID |
---|---|---|---|---|---|
MUTO-INTL |
SA626532 |
23cc87b1-a9a3-4353-8c87-b1a9a3b35378 |
05ef738e-c1bd-47f0-af73-8ec1bd67f053 |
e565c6bf-1ea5-42d9-a5c6-bf1ea502d975 |
66af2bce-3c69-4c8d-af2b-ce3c693c8d0d |
MUTO-INTL |
SA626533 |
20d7bf3c-4d4b-4a71-97bf-3c4d4b0a7167 |
4ea2f5e8-0405-42aa-a2f5-e8040572aabc |
be06b16f-f0e2-4536-86b1-6ff0e2c536d6 |
e9d43ba2-bcff-484f-943b-a2bcffd84fad |
OCCAMS-GB |
SA607699 |
cb5d4a49-81de-4122-9d4a-4981deb12259 |
8bf37cb6-b6fe-4008-b37c-b6b6fe6008ad |
bfd4a626-9de2-490b-94a6-269de2990b98 |
affbf0b9-9499-428e-bbf0-b99499128e44 |
OCCAMS-GB |
SA607698 |
b09b2280-e8fc-47d4-9b22-80e8fc27d485 |
76ab9223-63e8-4252-ab92-2363e8125206 |
a145c809-74d4-406f-85c8-0974d4c06f56 |
f10d4a9c-94da-452a-8d4a-9c94da052a23 |
APGI-AU |
SA410795 |
1beb3c43-5d4e-43a6-ab3c-435d4ea3a694 |
0df8773f-b56d-4eeb-b877-3fb56dbeebfe |
7d8c4e94-6069-4a1f-8c4e-946069fa1f9a |
9e61db2d-c6c3-40a4-a1db-2dc6c3e0a496 |
APGI-AU |
SA410803 |
2da01616-c406-4d2c-a016-16c4062d2cca |
af100481-8119-4b8a-9004-818119fb8a43 |
f8fae855-ed46-47a1-bae8-55ed4667a1cd |
d20b0507-52ee-42c0-8b05-0752eea2c0a3 |
PACA-CA |
SA600959 |
5721b452-5caa-4dca-a1b4-525caacdca7b |
3c23bc30-b2f4-4841-a3bc-30b2f43841e2 |
8529bdb7-148f-444c-a9bd-b7148f144c69 |
6141718f-488c-4940-8171-8f488c194069 |
PACA-CA |
SA600960 |
f48d238a-235a-4d95-8d23-8a235a1d9550 |
479cbb74-6392-472e-9cbb-746392472e11 |
f66e5338-03ae-40fc-ae53-3803ae70fc05 |
0e2ca59a-40ee-48e7-aca5-9a40ee68e7f6 |
LUCA-KR |
SA520548 |
8d5c5160-63a3-488c-9c51-6063a3b88c0a |
decdb673-60c8-4ff6-8db6-7360c86ff671 |
fdfa5730-4c53-4ac8-ba57-304c538ac8b0 |
b016acff-7874-405a-96ac-ff7874405abc |
LUCA-KR |
SA520549 |
53413615-8218-4448-8136-158218f44849 |
f95e8d71-5244-4f7e-9e8d-715244af7e52 |
5a4cd61e-b112-402e-8cd6-1eb112f02e00 |
318e6eca-b1e3-4489-8e6e-cab1e34489e7 |
@edsu7 to perform follow up comparison and analyses
Comparison blocked b/c of score issue: https://github.com/overture-stack/score/issues/385
Blocker resolved with release of Score v5.10.0; ticket may proceed
Rerunning benchmarking on 3 MUTO-INTL for BWAMEM2
Benchmarking power point ready.
Testing in QA delayed due to : https://github.com/icgc-argo/workflow-roadmap/issues/452
Draft copy in: https://github.com/icgc-argo-workflows/dnaaln
Testing commands:
.fai,.dict,.0123,.amb,.ann,.bwt.2bit.64,.pac
from step1 to test/data pipeline should be able to run with indexing stepTesting notes:
cleanup
only triggers ifup_aln
andup_qc
are detected