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icgc-argo / workflow-roadmap

Roadmap and management for genomic data processing
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MUTO-INTL first batch of 515 donors Mutect2 variant calling QC #399

Closed lindaxiang closed 3 months ago

lindaxiang commented 7 months ago

Mutect2 worksheet: https://docs.google.com/spreadsheets/d/13uxLJEjv5m6Q4nNOAsgeIKs8gm2rMctBK2CDXL5c4lU/edit#gid=20816066

Nov 22 Status - 515 donors in total, 499/515 completed. 6/515 failed due to input alignments downloading issue.

This ticket is to debug the failed jobs and re-run the jobs in Cumulus RDPC.

lindaxiang commented 4 months ago

All 515/515 donors have completed Mutect2 variant calling.

justincorrigible commented 3 months ago

Closing as completed with DR 8