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icgc-argo / workflow-roadmap

Roadmap and management for genomic data processing
GNU Affero General Public License v3.0
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Compare metrics for new alignments to past #407

Closed edsu7 closed 8 months ago

edsu7 commented 10 months ago

https://docs.google.com/spreadsheets/d/11Q0rjY5ISeImcm-_-KN5bNY7_hUA6eAsOGjOaQbsAC8/edit?usp=sharing

edsu7 commented 10 months ago

Processing times for various DNAseq tasks.

"BWA" has been flagged previously. scoreUpload and AlignedSeqQC could be better relative to historical records.

newplot - 2024-01-17T094038.869.png
edsu7 commented 8 months ago

Provided an update to dev-ops: https://docs.google.com/presentation/d/1cJXqGBeHC5eOcbJTnx--00Oq1b0VUJd31bACUppBgow/edit

They'll work to increase read/write on cumulus