Re-align 10 POG sequencing_experiment analysis

[lindaxiang]

The following sequencing_experiment analysis were accidentally aligned to hg19, we need to re-align them to GRCh38.

runId study_id analysis_id ref_genome_fa
wes-2af609019f04409086609d6d14991612    POG-CA  0e638172-27e0-4d15-a381-7227e07d1543    /nfs-2-c3/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-05f2da9287954fd8af05b25b15a52749    POG-CA  5dedec0e-4471-46be-adec-0e447126bef7    /nfs-4-c3/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-56412fc643704ad99d408e31bfaa66e9    POG-CA  fe073389-4a75-4b16-8733-894a751b1614    /nfs-3-c3/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-89a11a01f862481d8f2cc752fcb40e53    POG-CA  11c15766-ae4d-490d-8157-66ae4de90d48    /nfs-3-c4/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-275f8e028f2647cab86de433a538941f    POG-CA  d6211af1-4594-4045-a11a-f14594104540    /nfs-3-c2/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-de765fa3512e448593fcd1f5cb233948    POG-CA  1ff9e14b-cd11-420f-b9e1-4bcd11c20f0f    /nfs-1-c1/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-89be791f006f46129652ca64db70c389    POG-CA  d6eb6eea-037b-443d-ab6e-ea037b143d1c    /nfs-2-c2/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-cf87b8c3dba947b2bc10173840acc36f    POG-CA  15926043-8f4e-40b2-9260-438f4e80b209    /nfs-4-c1/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-e2f9e9745bba4530b0d5564d2de69641    POG-CA  905495ec-0999-465b-9495-ec0999f65b65    /nfs-4-c4/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-f030e10cce884fa98a4e711496ea4cc5    POG-CA  b13fef95-7dcd-498d-bfef-957dcd998dab    /nfs-2-c1/reference/ref_hg19/GRCh37d5_ref/genome.fa
wes-3db69f18dae949fcb2ac7d2358753763   POG-CA  21252cf9-4027-47af-a52c-f9402777af8c

[lindaxiang]

Todo:

• [ ] suppress all the produced analysis from the above runs
• [ ] realign the analysis with GRCh38

[edsu7]

Retriggered jobs in: https://docs.google.com/spreadsheets/d/17cyMniEtzoV2565vmyvFmVm2YqLV817vtrZjq6bTuuE/edit#gid=834210998

[edsu7]

The following analyses have been unpublished:

"26645b63-1266-443b-a45b-631266943b47",
"e63ee1b3-1899-4b6c-bee1-b318995b6c97",
"045145ae-583d-4c01-9145-ae583d8c0167",
"7b213d6a-8c58-4ea5-a13d-6a8c589ea5a6",
"27726520-c0f5-4f80-b265-20c0f5bf808c",
"3894987f-6b11-4187-9498-7f6b117187c5",
"209393be-908b-4c91-9393-be908b2c91ad",
"d185410c-9a2f-4f74-8541-0c9a2faf7408",
"19ce7a46-c3d2-4531-8e7a-46c3d27531f0",
"fff56bde-6d01-41f0-b56b-de6d0101f0a7",
"2888690a-762f-4b6a-8869-0a762feb6a62",
"b8de3ca6-1839-47bd-9e3c-a6183917bd61",
"22b4ed1c-dff3-41f7-b4ed-1cdff371f77d",
"dc478bcd-c677-40e6-878b-cdc67720e6c7",
"0d527a83-c233-470f-927a-83c233270f65",
"19c7bbf2-be84-4f7d-87bb-f2be84bf7dd1",
"4e046b66-1806-4dd5-846b-661806ddd584",
"8fae9e27-ab8f-4c9b-ae9e-27ab8f1c9b96",
"9eaae7f6-5c96-448d-aae7-f65c96648d83",
"b054f9c4-5ae2-4bfc-94f9-c45ae28bfc66"
"21252cf9-4027-47af-a52c-f9402777af8c",
"75e89ebe-b70c-4d70-a89e-beb70ccd7078"

new realignments:

27c18e69-db73-416a-818e-69db73616a67
85a5a122-95df-464c-a5a1-2295dfe64cfc
097aa69b-3c98-4eca-baa6-9b3c987eca05
4c24b2ed-50fa-4af9-a4b2-ed50fa1af9eb
79b219b4-17f0-404c-b219-b417f0c04c30
87c6d8c5-985e-40bc-86d8-c5985e20bc7b
53d57526-66f0-49fe-9575-2666f0f9feb4
ac344b7f-3fdd-4bb6-b44b-7f3fddabb692
60423725-b266-4c95-8237-25b2664c954a
da7a2bdd-b5f4-4b0e-ba2b-ddb5f4cb0e68
5c861e55-0009-47fa-861e-55000947faff
bdc3ee33-8e3e-43f9-83ee-338e3eb3f989
04e9f8ec-02f5-41d9-a9f8-ec02f581d920
ca3a2cc3-4c53-47b0-ba2c-c34c5387b0aa
31b58c72-9aa0-4afc-b58c-729aa0bafc46
d6aec6a8-f742-439e-aec6-a8f742139e5d
10e86f28-93f9-42c2-a86f-2893f9d2c257
f25f5f62-5542-467f-9f5f-625542267f62

[edsu7]

SA611447 is pending due to data integrity issue in submission

[edsu7]

Remaining SA611447 is being worked on in https://docs.google.com/spreadsheets/d/1yq_2CtufW3xJcF-19JtiLf6aeTYAQVIuJAChHCVIOF4/edit#gid=834210998

part of https://github.com/icgc-argo/workflow-roadmap/issues/427

[edsu7]

found one more sample SA612900

[edsu7]

complete