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icgc-argo / workflow-roadmap

Roadmap and management for genomic data processing
GNU Affero General Public License v3.0
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Check how many MONSTAR variant fall in BED file regions #453

Open edsu7 opened 3 months ago

edsu7 commented 3 months ago

Based on completion of : https://github.com/icgc-argo/workflow-roadmap/issues/451

Using the following variant extraction pipeline: https://github.com/icgc-argo/workflow-roadmap/issues/425

Audit the extracted variants to see if they fall within the expected BED file regions.

Audit find those that do not and report ratio.