Workflow Run Failure - Mismatch CRAM and CRAI basename in input alignment files

[lindaxiang]

Detailed Description

Mutect2 wf expects the input CRAM and CRAI files have the same basename, however due to the issue that date string could be different for all files in one SONG payload, there are alignment files happened to have different data string in the filename, which makes CRAM and CRAI have different basename, therefore cause the failure.

List all runids affected

wes-52a6c109af0543b881fbbca81a696400 (without BQSR) wes-49e6698d1d2f4876be6c08f261b449cc (with BQSR)

Approach to address this

Address the issue and re-run the failed jobs.

Exit criteria

• [x] Issue has been resolved
• [ ] Run is resumed

[junjun-zhang]

Alignment workflow has been update to address this: https://github.com/icgc-argo/dna-seq-processing-wfs/releases/tag/1.5.1