Add Freya code to MALAMUTE [!5 merged]

[moosebuild]

In GitLab by @cticenhour on Dec 14, 2021, 17:21

Merges integrate-freya -> devel

This MR adds code formerly residing in Freya to MALAMUTE. The MALAMUTE Makefile and documentation configuration were also updated to accommodate the new code and new module dependencies. Issues relevant to the history retained by moving over Freya objects, tests, and input files have been re-created in MALAMUTE for SQA reference and compliance.

Closes #5

Closes #9

Closes #10

Closes #11

Closes #12

Closes #13

Refs #14

Closes #15

Closes #16

Closes #17

Closes #19

Refs #20

Closes #21

Closes #22

Closes #23

Closes #24

Closes #25

Closes #26

Refs #29

Closes #31

Closes #32

[moosebuild]

In GitLab by @cticenhour on Dec 14, 2021, 17:54

added 1 commit

• 575dcfff - Convert test spec issue numbers from Freya to MALAMUTE (#5)

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Dec 14, 2021, 18:07

Note: this cannot be merged until idaholab/moose#17641 has made it to the MALAMUTE submodule.

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 19:12

added 199 commits

• 575dcfff...9953cd50 - 95 commits from branch idaholab:devel
• 9af90dfe - simplified engineering scale heat conduction model of solid yittra
• aac3f915 - Address comments and correct units for specific heat capacity, Refs #9
• 078c05b8 - Simple raditive heat transfer bc, closes #11
• e55e4ae9 - Apply reviewer suggestions Refs #11
• fa5c489f - Address reviewer comments, Closes #11
• ab12e3a5 - Add thermal contact conductance interfacekernel
• 5416a328 - Add thermal interface tests
• 1d5f6627 - Add thermal interface documentation
• 2c3884aa - Address review comments (#10)
• 174e28a5 - Move marmot example input file into examples directory (#9)
• 89ff3c52 - generic material property functions for graphite
• 9bb54daf - Stainless steel thermal material properties, Refs #12
• e595b96f - Add graphite thermal and electrical temperature dependent materials properties...
• 08f126a5 - Address reviewer comments, Refs #12
• e822ad83 - Apply suggestion to doc/content/source/materials/GraphiteElectricalResistivity.md
• 3464fd44 - Apply suggestion to doc/content/source/materials/StainlessSteelThermal.md
• eb140c8a - Apply suggestion to doc/content/source/materials/StainlessSteelElectricalResistivity.md
• 0810a00e - Apply suggestion to doc/content/source/materials/GraphiteThermal.md
• b2393ac5 - Rename ThermalContactConductance to ThermalContactCondition to reduce...
• 734cb91d - Add harmonic mean of graphite and stainless steel hardness
• 81b057ab - Convert ThermalContactCondition to AD and add jacobian test.
• 6b8dfbc5 - Update ThermalContactCondition to allow for supplied or calculated contact conductance values.
• c7dc1e14 - Update ELK submodule to add updates for ElectricalContactCondition and update old tests.
• 50f5cd01 - Add tests for error catching and calculated conductances.
• 0c06daba - Update documentation, moosedocs config file, and bibtex (add new, and remove duplicate)
• 41e74850 - Fix debug test failures due to specific use of std::pow in computeQpResidual. (#13)
• e62de82a - Convert all Freya-only code from master/neighbor to primary/secondary
• 20a36d38 - Make updates to documentation related to the splitting factor, and clean up markdown formatting.
• 9e505936 - Convert material properties in ThermalContactCondition to AD and update tests.
• f0b0eeb7 - Fixup thermal_interface input file for ConductivityLaplacian change
• 8d4ed0f4 - Convert HeatConduction to ADHeatConduction in tests
• b982dc2d - Switch electrical resistivity tests to use conductivity for ConductivityLaplacian and fixup for AD.
• aa3ea6a2 - Add template <is_ad> capability to existing temperature dep material properties, Refs #12
• cf82a1bf - Add AD and non-AD versions of the thermal material
• 18f8da2b - Add AD and non-AD test versions for the
• 3de83a1f - Address reviewer comments to convert resistivity to conductivity within the class, Refs #12
• ff997d40 - Address review comments for derivative calculation for is_ad materials, Refs #14
• 9fc076f0 - Switch from mooseError to mooseWarning in material property lower range...
• 768af502 - Re-gold interfacekernels tests due to ELK contact model update (#16)
• e733b463 - Demo yttria block microapp, higher temp 1300-1600K, Refs #9
• ca985f24 - Add test files, Refs #9
• ee76a813 - Remove centroid syntax test as similar syntax is tested elsewhere (#9)
• cfa5a112 - Add coefficient of thermal expansion curves fits
• 0d5765fa - Address reviewer comments, Refs #12
• df4bf356 - Add analytic solution test input and analytic test functions (#13)
• 467e03c0 - Clean up code in ThermalContactCondition and fix broken potential variable retrieval bug (#13)
• 24cd8db8 - Regold old thermal contact tests and add analytic solution test specification (#13)
• b8428d09 - Convert more objects to AD in thermal_interface base test input file (#14)
• 4eb53e4c - Add thermal contact validation documentation (#13)
• 14be1c86 - Address review comments (#13)
• e81851ee - Add Cincotti ref to thermal contact test function descriptions (#13)
• 0ba1248a - Convert user conductances and pressure in thermal contact to fxns (#13)
• d65bb9e4 - Add base cubit journal file for experiment mesh creation (#9)
• c6b0d11f - Plunger, die, powder model, Refs #9
• 16d041b5 - Fixup right_die_graphite sideset in Cincotti journal file (#17)
• 48f8cead - Log of Al's work as sent, Closes #18
• c22775b3 - Add README file based on overview conversation with Al, Closes #18
• d910a92f - Add capability to run syntax checkes on select particle contact simulations, Closes #18
• 335d16ee - Modify original files to run with current contact module, Closes #18
• 54be1abf - Update README.md to fix formatting
• 58d158b5 - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• 0ee32da8 - Adds example cincotti input file for multiapp effort, including revised...
• c6cfcc78 - Fix typo in ThermalContactCondition doco
• 873976f2 - Restore lower range check tests for warnings and adjust requirements wording.
• a5108d01 - Update sample one to include current ramp and background temperature of 293
• 8df877b0 - Add samples three and four, and fixup typo in sample one.
• 43ed5a87 - Remove auxvariables from tested outputs in Cincotti samples 1 - 3.
• 492946bd - Lower end_time and raise min_parallel for sample tests to stop timeouts in debug testing.
• 2d65d0d2 - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• cc67c101 - Example engineering scale yttria block input file, one way coupling, Refs #9
• 31a61b58 - Add new phase-field example input file with intrinsic defects of Y and O...
• a2132b79 - Add tests file for marmot examples and add comments to old phase-field example file. Ref #19
• 10016d51 - Add demonstration engineering scale files with mechanics included, Refs #9
• a7722bf7 - Initial Dr Sinter mesh file with electrodes for engineering simulation.
• 3e5f0e89 - Mesh journal file, input file for complete Dr. Sinter geometry,
• 3af90b2a - Add Dr. Sinter data extraction script and example data (empty die) (#21)
• 6aafb943 - Working with input file order of the thermal contact blocks
• 2aeb866b - Address review comments (#21)
• 66feeb35 - Add multi-app example input files with one-way coupling from engineering scale...
• 09ca9571 - Add multiapp one-way coupling examples to tests file. Ref #9
• 870a8af7 - Add mechanics, mechanical contact to the complete dr. sinter geometry
• 76b6a03a - update pressure BCs
• 752b42b3 - Change upper bound temperature checks to warnings to allow simulation to proceed, Refs #12
• 37093d1f - Mechanics only model with temperature dependent yield stress in plasticity...
• 5770a66a - single block isoPlastic model with temperature dependent yield stress....
• 4156dcf6 - Add yttira block with two way coupling to/from updated phase-field model Ref #9
• 24439e28 - Clean up multi-app one-way coupling examples Ref #9
• 3bb07196 - Add multi-app two-way coupling example with lots of particles in PF app. Ref #9
• f9e822c8 - Transition SideFluxIntegral to SideDiffusiveFluxIntegral (#23)
• 42a28c3d - Modify sideset name in dr sinter nodalcontact mesh (#20)
• 27ecb6bf - Add two way phase field coupling prototype (without controls) (#20)
• f6f1014a - Add one way phase field coupling electrothermal engineering model (with controls) (#20)
• 8d8ff971 - Fixup from #26 comments
• afdd5f59 - Fixup from #25 comments
• b534fbf1 - Add two way coupling (single location) prototype with lots of particles (#20)
• 8361a8c2 - Update multiapp main apps to use catch_up, four particle microapp versions, Closes #9
• 3050f4eb - Be more specific about which two_block image we want (#24)
• 657e0e4b - Move sps example files to new examples/sps folder (#5)
• a367ee84 - Find and replace FreyaApp with MalamuteApp (#5)
• d99f2135 - Enable electromagnetics, contact, phase field, and tensor mechanics modules (#5)
• bfe6fa27 - Add MALAMUTE headers to sps source (#5)
• 933f1086 - More Freya find and replace (#5)
• 56be1e39 - Fixup documentation and SQA builds (#5)
• 7f04174d - Convert test spec issue numbers from Freya to MALAMUTE (#5)

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Dec 23, 2021, 23:12

added 1 commit

• 95668efe - Add link to malamute code coverage in navigation menu

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Jan 11, 2022, 08:15

added 109 commits

• 7f04174d...ee6f6e18 - 5 commits from branch idaholab:devel
• 1ec708e6 - simplified engineering scale heat conduction model of solid yittra
• d2726c46 - Address comments and correct units for specific heat capacity, Refs #9
• 5a05be44 - Simple raditive heat transfer bc, closes #11
• 96750778 - Apply reviewer suggestions Refs #11
• f73f81c3 - Address reviewer comments, Closes #11
• 3dd5e448 - Add thermal contact conductance interfacekernel
• 212a0273 - Add thermal interface tests
• 72f61426 - Add thermal interface documentation
• 23030355 - Address review comments (#10)
• 64afa95f - Move marmot example input file into examples directory (#9)
• e6da5aaf - generic material property functions for graphite
• b3f64ed9 - Stainless steel thermal material properties, Refs #12
• b238c7a9 - Add graphite thermal and electrical temperature dependent materials properties...
• 28ba0061 - Address reviewer comments, Refs #12
• 1711e8a1 - Apply suggestion to doc/content/source/materials/GraphiteElectricalResistivity.md
• 0468ab97 - Apply suggestion to doc/content/source/materials/StainlessSteelThermal.md
• 5c786d33 - Apply suggestion to doc/content/source/materials/StainlessSteelElectricalResistivity.md
• bfaf339c - Apply suggestion to doc/content/source/materials/GraphiteThermal.md
• 92095968 - Rename ThermalContactConductance to ThermalContactCondition to reduce...
• 0417b852 - Add harmonic mean of graphite and stainless steel hardness
• f698455d - Convert ThermalContactCondition to AD and add jacobian test.
• 8e8757d5 - Update ThermalContactCondition to allow for supplied or calculated contact conductance values.
• c156289c - Update ELK submodule to add updates for ElectricalContactCondition and update old tests.
• 8ff67769 - Add tests for error catching and calculated conductances.
• e11887e7 - Update documentation, moosedocs config file, and bibtex (add new, and remove duplicate)
• 2a694fda - Fix debug test failures due to specific use of std::pow in computeQpResidual. (#13)
• 6b9ec227 - Convert all Freya-only code from master/neighbor to primary/secondary
• 726a091d - Make updates to documentation related to the splitting factor, and clean up markdown formatting.
• 37feaa0d - Convert material properties in ThermalContactCondition to AD and update tests.
• 8ca771bc - Fixup thermal_interface input file for ConductivityLaplacian change
• b8483b69 - Convert HeatConduction to ADHeatConduction in tests
• 95ff48f2 - Switch electrical resistivity tests to use conductivity for ConductivityLaplacian and fixup for AD.
• e214f279 - Add template <is_ad> capability to existing temperature dep material properties, Refs #12
• b8d94e05 - Add AD and non-AD versions of the thermal material
• 7b4b0543 - Add AD and non-AD test versions for the
• 8435a252 - Address reviewer comments to convert resistivity to conductivity within the class, Refs #12
• 0890d97c - Address review comments for derivative calculation for is_ad materials, Refs #14
• 32eda84b - Switch from mooseError to mooseWarning in material property lower range...
• 3b603e1b - Re-gold interfacekernels tests due to ELK contact model update (#16)
• cb18a438 - Demo yttria block microapp, higher temp 1300-1600K, Refs #9
• 2c75d098 - Add test files, Refs #9
• 85f38032 - Remove centroid syntax test as similar syntax is tested elsewhere (#9)
• 6d3843b9 - Add coefficient of thermal expansion curves fits
• 28c791be - Address reviewer comments, Refs #12
• 7799b12e - Add analytic solution test input and analytic test functions (#13)
• 19bc5ae8 - Clean up code in ThermalContactCondition and fix broken potential variable retrieval bug (#13)
• 095a364c - Regold old thermal contact tests and add analytic solution test specification (#13)
• 09177e86 - Convert more objects to AD in thermal_interface base test input file (#14)
• da3c627b - Add thermal contact validation documentation (#13)
• 81e38180 - Address review comments (#13)
• 5d03f174 - Add Cincotti ref to thermal contact test function descriptions (#13)
• 2395fdb3 - Convert user conductances and pressure in thermal contact to fxns (#13)
• fe08d4a2 - Add base cubit journal file for experiment mesh creation (#9)
• 7a6c2a3f - Plunger, die, powder model, Refs #9
• 8bf3ea49 - Fixup right_die_graphite sideset in Cincotti journal file (#17)
• 77c967bb - Log of Al's work as sent, Closes #18
• f2f793be - Add README file based on overview conversation with Al, Closes #18
• e72c8cf5 - Add capability to run syntax checkes on select particle contact simulations, Closes #18
• 29958ab3 - Modify original files to run with current contact module, Closes #18
• 24fd8cc4 - Update README.md to fix formatting
• 381af913 - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• eb3039bb - Adds example cincotti input file for multiapp effort, including revised...
• 72cac773 - Fix typo in ThermalContactCondition doco
• cdb497f7 - Restore lower range check tests for warnings and adjust requirements wording.
• 9fd45a06 - Update sample one to include current ramp and background temperature of 293
• a6c15c3b - Add samples three and four, and fixup typo in sample one.
• 75f86cae - Remove auxvariables from tested outputs in Cincotti samples 1 - 3.
• bcd2de62 - Lower end_time and raise min_parallel for sample tests to stop timeouts in debug testing.
• d06e182e - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• 73c28b36 - Example engineering scale yttria block input file, one way coupling, Refs #9
• d48eac19 - Add new phase-field example input file with intrinsic defects of Y and O...
• d2b5edf7 - Add tests file for marmot examples and add comments to old phase-field example file. Ref #19
• a150e4b0 - Add demonstration engineering scale files with mechanics included, Refs #9
• 9fb07885 - Initial Dr Sinter mesh file with electrodes for engineering simulation.
• bd45c63c - Mesh journal file, input file for complete Dr. Sinter geometry,
• 66c325b7 - Add Dr. Sinter data extraction script and example data (empty die) (#21)
• 88bc05fc - Working with input file order of the thermal contact blocks
• b150cd63 - Address review comments (#21)
• e59fbea8 - Add multi-app example input files with one-way coupling from engineering scale...
• b766456d - Add multiapp one-way coupling examples to tests file. Ref #9
• 94b06b4c - Add mechanics, mechanical contact to the complete dr. sinter geometry
• 1425a18b - update pressure BCs
• e676d145 - Change upper bound temperature checks to warnings to allow simulation to proceed, Refs #12
• 6ab3f0f5 - Mechanics only model with temperature dependent yield stress in plasticity...
• 88f72718 - single block isoPlastic model with temperature dependent yield stress....
• 5c9c803b - Add yttira block with two way coupling to/from updated phase-field model Ref #9
• 307724e6 - Clean up multi-app one-way coupling examples Ref #9
• 2eca6591 - Add multi-app two-way coupling example with lots of particles in PF app. Ref #9
• d00768ae - Transition SideFluxIntegral to SideDiffusiveFluxIntegral (#23)
• 1625ecfe - Modify sideset name in dr sinter nodalcontact mesh (#20)
• f81105e7 - Add two way phase field coupling prototype (without controls) (#20)
• 7509d14c - Add one way phase field coupling electrothermal engineering model (with controls) (#20)
• f8a832a8 - Fixup from #26 comments
• 08b84ebf - Fixup from #25 comments
• cc9e0767 - Add two way coupling (single location) prototype with lots of particles (#20)
• 5163f4a4 - Update multiapp main apps to use catch_up, four particle microapp versions, Closes #9
• ada16c5b - Be more specific about which two_block image we want (#24)
• 12ddf0d5 - Move sps example files to new examples/sps folder (#5)
• 386219b0 - Find and replace FreyaApp with MalamuteApp (#5)
• fd62b563 - Enable electromagnetics, contact, phase field, and tensor mechanics modules (#5)
• 7f90021c - Add MALAMUTE headers to sps source (#5)
• a97d00d3 - More Freya find and replace (#5)
• 1e06ce34 - Fixup documentation and SQA builds (#5)
• 9c3b3964 - Convert test spec issue numbers from Freya to MALAMUTE (#5)

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Jun 30, 2022, 14:42

added 333 commits

• 9c3b3964...4871f812 - 220 commits from branch idaholab:devel
• 6242740b - simplified engineering scale heat conduction model of solid yittra
• 2ad94f69 - Address comments and correct units for specific heat capacity, Refs #9
• 1fa69c78 - Simple raditive heat transfer bc, closes #11
• 97bb3a3e - Apply reviewer suggestions Refs #11
• 6490bf53 - Address reviewer comments, Closes #11
• ae625968 - Add thermal contact conductance interfacekernel
• e0e1dca3 - Add thermal interface tests
• 51a56d2d - Add thermal interface documentation
• 4a2b225f - Address review comments (#10)
• 7ffb3954 - Move marmot example input file into examples directory (#9)
• 602e2499 - generic material property functions for graphite
• 9abda784 - Stainless steel thermal material properties, Refs #12
• 1df077ea - Add graphite thermal and electrical temperature dependent materials properties...
• 2edc3437 - Address reviewer comments, Refs #12
• 7d5a924d - Apply suggestion to doc/content/source/materials/GraphiteElectricalResistivity.md
• 52af089c - Apply suggestion to doc/content/source/materials/StainlessSteelThermal.md
• 3e066818 - Apply suggestion to doc/content/source/materials/StainlessSteelElectricalResistivity.md
• 516b30d1 - Apply suggestion to doc/content/source/materials/GraphiteThermal.md
• 06181086 - Rename ThermalContactConductance to ThermalContactCondition to reduce...
• a12cf888 - Add harmonic mean of graphite and stainless steel hardness
• 5697f8b3 - Convert ThermalContactCondition to AD and add jacobian test.
• 79f23bf3 - Update ThermalContactCondition to allow for supplied or calculated contact conductance values.
• 0a3b70d9 - Update ELK submodule to add updates for ElectricalContactCondition and update old tests.
• 1ce3839b - Add tests for error catching and calculated conductances.
• 944045a2 - Update documentation, moosedocs config file, and bibtex (add new, and remove duplicate)
• 0fad5ef7 - Fix debug test failures due to specific use of std::pow in computeQpResidual. (#13)
• 733976fd - Convert all Freya-only code from master/neighbor to primary/secondary
• 81db0ec0 - Make updates to documentation related to the splitting factor, and clean up markdown formatting.
• fc21ca72 - Convert material properties in ThermalContactCondition to AD and update tests.
• 6d98e2ac - Fixup thermal_interface input file for ConductivityLaplacian change
• 8a425449 - Convert HeatConduction to ADHeatConduction in tests
• 038dffff - Switch electrical resistivity tests to use conductivity for ConductivityLaplacian and fixup for AD.
• da57be6c - Add template <is_ad> capability to existing temperature dep material properties, Refs #12
• 1e887be9 - Add AD and non-AD versions of the thermal material
• b66a55e7 - Add AD and non-AD test versions for the
• 4b67e6b6 - Address reviewer comments to convert resistivity to conductivity within the class, Refs #12
• b9bbc2cf - Address review comments for derivative calculation for is_ad materials, Refs #14
• fea6e2c0 - Switch from mooseError to mooseWarning in material property lower range...
• bd07041a - Re-gold interfacekernels tests due to ELK contact model update (#16)
• 83047b1b - Demo yttria block microapp, higher temp 1300-1600K, Refs #9
• 0063583a - Add test files, Refs #9
• 7a8c997e - Remove centroid syntax test as similar syntax is tested elsewhere (#9)
• 6577c090 - Add coefficient of thermal expansion curves fits
• a43a5271 - Address reviewer comments, Refs #12
• 770f688e - Add analytic solution test input and analytic test functions (#13)
• 324a0046 - Clean up code in ThermalContactCondition and fix broken potential variable retrieval bug (#13)
• ae37f353 - Regold old thermal contact tests and add analytic solution test specification (#13)
• 48ad55d5 - Convert more objects to AD in thermal_interface base test input file (#14)
• 8b39fb0e - Add thermal contact validation documentation (#13)
• 41edb68c - Address review comments (#13)
• 9a03a8c1 - Add Cincotti ref to thermal contact test function descriptions (#13)
• 1eed190d - Convert user conductances and pressure in thermal contact to fxns (#13)
• 3f9b7f0a - Add base cubit journal file for experiment mesh creation (#9)
• 11cf19a6 - Plunger, die, powder model, Refs #9
• 35ce890d - Fixup right_die_graphite sideset in Cincotti journal file (#17)
• 664752b7 - Log of Al's work as sent, Closes #18
• 243012b1 - Add README file based on overview conversation with Al, Closes #18
• df23b138 - Add capability to run syntax checkes on select particle contact simulations, Closes #18
• 6d8ef496 - Modify original files to run with current contact module, Closes #18
• be0d2e80 - Update README.md to fix formatting
• 79e250de - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• 632ef9d6 - Adds example cincotti input file for multiapp effort, including revised...
• e85bda75 - Fix typo in ThermalContactCondition doco
• 83b8385b - Restore lower range check tests for warnings and adjust requirements wording.
• da5283e6 - Update sample one to include current ramp and background temperature of 293
• 0a4046a5 - Add samples three and four, and fixup typo in sample one.
• 6486e45d - Remove auxvariables from tested outputs in Cincotti samples 1 - 3.
• cec38756 - Lower end_time and raise min_parallel for sample tests to stop timeouts in debug testing.
• a054236f - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• ffb028ef - Example engineering scale yttria block input file, one way coupling, Refs #9
• 4f8e864f - Add new phase-field example input file with intrinsic defects of Y and O...
• f19ef2cb - Add tests file for marmot examples and add comments to old phase-field example file. Ref #19
• df637817 - Add demonstration engineering scale files with mechanics included, Refs #9
• 4a877c90 - Initial Dr Sinter mesh file with electrodes for engineering simulation.
• 059e0394 - Mesh journal file, input file for complete Dr. Sinter geometry,
• 1fa69226 - Add Dr. Sinter data extraction script and example data (empty die) (#21)
• af5c33dc - Working with input file order of the thermal contact blocks
• b2593fe3 - Address review comments (#21)
• b6a4960d - Add multi-app example input files with one-way coupling from engineering scale...
• 378721c6 - Add multiapp one-way coupling examples to tests file. Ref #9
• 4dbbd47c - Add mechanics, mechanical contact to the complete dr. sinter geometry
• a8dc7dc8 - update pressure BCs
• f34a3ad9 - Change upper bound temperature checks to warnings to allow simulation to proceed, Refs #12
• 31a86b75 - Mechanics only model with temperature dependent yield stress in plasticity...
• 2e488622 - single block isoPlastic model with temperature dependent yield stress....
• 714bdad8 - Add yttira block with two way coupling to/from updated phase-field model Ref #9
• fe7a15c0 - Clean up multi-app one-way coupling examples Ref #9
• ac2c0840 - Add multi-app two-way coupling example with lots of particles in PF app. Ref #9
• caeb9cb1 - Transition SideFluxIntegral to SideDiffusiveFluxIntegral (#23)
• a3718a89 - Modify sideset name in dr sinter nodalcontact mesh (#20)
• 51467102 - Add two way phase field coupling prototype (without controls) (#20)
• f18575ae - Add one way phase field coupling electrothermal engineering model (with controls) (#20)
• ff863a12 - Fixup from #26 comments
• 8752628d - Fixup from #25 comments
• a7f1a657 - Add two way coupling (single location) prototype with lots of particles (#20)
• c99a2bca - Update multiapp main apps to use catch_up, four particle microapp versions, Closes #9
• f2a4afdc - Be more specific about which two_block image we want (#24)
• 63441065 - Move sps example files to new examples/sps folder (#5)
• 9c2a3269 - Find and replace FreyaApp with MalamuteApp (#5)
• 0fde954f - Enable electromagnetics, contact, phase field, and tensor mechanics modules (#5)
• 8c1b8b3c - Add MALAMUTE headers to sps source (#5)
• a28b220d - More Freya find and replace (#5)
• 751195f5 - Fixup documentation and SQA builds (#5)
• d4033c3e - Convert test spec issue numbers from Freya to MALAMUTE (#5)
• 5d540b77 - Fixup radiation heat loss test due to CIVET changes (#29)
• ac4823eb - Fixup deprecated input file objects and parameters
• 90741b87 - Fix thermal eigenstrain classes (#000)
• f1110471 - Update thermal eigenstrain API (#000)
• b1167c74 - Deduplicate classes (#000)
• 438be8bd - Removing unused parameters. #31
• 68913055 - Moving second_order = true to outside the generator
• 6565325c - Update oneway_coupling_demo_fcn_electricpotential.i
• 260d2eb8 - Convert ConductivityLaplacian instances to ADMatDiffusion (#32)

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Jun 30, 2022, 14:47

added 75 commits

• b323fb84 - Re-gold interfacekernels tests due to ELK contact model update (#16)
• 66a55637 - Demo yttria block microapp, higher temp 1300-1600K, Refs #9
• 523667d4 - Add test files, Refs #9
• f3a17d31 - Remove centroid syntax test as similar syntax is tested elsewhere (#9)
• 9f334a6d - Add coefficient of thermal expansion curves fits
• 8961e731 - Address reviewer comments, Refs #12
• f0fb3ec7 - Add analytic solution test input and analytic test functions (#13)
• ceb4ff29 - Clean up code in ThermalContactCondition and fix broken potential variable retrieval bug (#13)
• 9583960e - Regold old thermal contact tests and add analytic solution test specification (#13)
• 9ce7ad2d - Convert more objects to AD in thermal_interface base test input file (#14)
• de9182ee - Add thermal contact validation documentation (#13)
• 4aed01f5 - Address review comments (#13)
• 91fc5f74 - Add Cincotti ref to thermal contact test function descriptions (#13)
• a01aff3d - Convert user conductances and pressure in thermal contact to fxns (#13)
• bcf78997 - Add base cubit journal file for experiment mesh creation (#9)
• d03c9d8e - Plunger, die, powder model, Refs #9
• 0edf4da6 - Fixup right_die_graphite sideset in Cincotti journal file (#17)
• 155cd22e - Log of Al's work as sent, Closes #18
• c3d3400a - Add README file based on overview conversation with Al, Closes #18
• f2d86590 - Add capability to run syntax checkes on select particle contact simulations, Closes #18
• af069814 - Modify original files to run with current contact module, Closes #18
• 94f53adc - Update README.md to fix formatting
• e390f038 - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• c3999384 - Adds example cincotti input file for multiapp effort, including revised...
• bd02a1b2 - Fix typo in ThermalContactCondition doco
• 7c716a3a - Restore lower range check tests for warnings and adjust requirements wording.
• 7c00f64f - Update sample one to include current ramp and background temperature of 293
• 29fb0c92 - Add samples three and four, and fixup typo in sample one.
• 3afc807f - Remove auxvariables from tested outputs in Cincotti samples 1 - 3.
• b3b98e19 - Lower end_time and raise min_parallel for sample tests to stop timeouts in debug testing.
• ab2e0f2a - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• 30395277 - Example engineering scale yttria block input file, one way coupling, Refs #9
• 1bde5579 - Add new phase-field example input file with intrinsic defects of Y and O...
• ce044989 - Add tests file for marmot examples and add comments to old phase-field example file. Ref #19
• ec54fb61 - Add demonstration engineering scale files with mechanics included, Refs #9
• 56101574 - Initial Dr Sinter mesh file with electrodes for engineering simulation.
• 24cef937 - Mesh journal file, input file for complete Dr. Sinter geometry,
• 6ea4ba92 - Add Dr. Sinter data extraction script and example data (empty die) (#21)
• 0248bab7 - Working with input file order of the thermal contact blocks
• eb1b23b9 - Address review comments (#21)
• 736025aa - Add multi-app example input files with one-way coupling from engineering scale...
• 85b0a7d5 - Add multiapp one-way coupling examples to tests file. Ref #9
• 38f4e525 - Add mechanics, mechanical contact to the complete dr. sinter geometry
• de4a70f1 - update pressure BCs
• 9150331e - Change upper bound temperature checks to warnings to allow simulation to proceed, Refs #12
• 027fe89c - Mechanics only model with temperature dependent yield stress in plasticity...
• 1972fa3a - single block isoPlastic model with temperature dependent yield stress....
• 83c670b7 - Add yttira block with two way coupling to/from updated phase-field model Ref #9
• 485ee417 - Clean up multi-app one-way coupling examples Ref #9
• 38038231 - Add multi-app two-way coupling example with lots of particles in PF app. Ref #9
• 029e31dd - Transition SideFluxIntegral to SideDiffusiveFluxIntegral (#23)
• 4945b0af - Modify sideset name in dr sinter nodalcontact mesh (#20)
• 324e036a - Add two way phase field coupling prototype (without controls) (#20)
• de0342c2 - Add one way phase field coupling electrothermal engineering model (with controls) (#20)
• 181d25fa - Fixup from #26 comments
• 61247ae2 - Fixup from #25 comments
• 7fff56ab - Add two way coupling (single location) prototype with lots of particles (#20)
• 7e927ec3 - Update multiapp main apps to use catch_up, four particle microapp versions, Closes #9
• dcd829c4 - Be more specific about which two_block image we want (#24)
• ad29dff0 - Move sps example files to new examples/sps folder (#5)
• c2c02768 - Find and replace FreyaApp with MalamuteApp (#5)
• 04ff7266 - Enable electromagnetics, contact, phase field, and tensor mechanics modules (#5)
• 6001b888 - Add MALAMUTE headers to sps source (#5)
• 38e59914 - More Freya find and replace (#5)
• be63aa4d - Fixup documentation and SQA builds (#5)
• bf8457b1 - Convert test spec issue numbers from Freya to MALAMUTE (#5)
• 0e6aa371 - Fixup radiation heat loss test due to CIVET changes (#29)
• 58255ac0 - Fixup deprecated input file objects and parameters
• 6c928004 - Fix thermal eigenstrain classes (#000)
• 82f55b22 - Update thermal eigenstrain API (#000)
• 4d28fd79 - Deduplicate classes (#000)
• b25fd607 - Removing unused parameters. #31
• 3ed6c4bc - Moving second_order = true to outside the generator
• 6941303a - Update oneway_coupling_demo_fcn_electricpotential.i
• d7bd2665 - Convert ConductivityLaplacian instances to ADMatDiffusion (#32)

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Jun 30, 2022, 15:27

added 53 commits

• a4271ca0 - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• 4deefc8b - Adds example cincotti input file for multiapp effort, including revised...
• e6314d17 - Fix typo in ThermalContactCondition doco
• c18a630e - Restore lower range check tests for warnings and adjust requirements wording.
• 8413b433 - Update sample one to include current ramp and background temperature of 293
• 88b130ab - Add samples three and four, and fixup typo in sample one.
• d9d7a842 - Remove auxvariables from tested outputs in Cincotti samples 1 - 3.
• 9729b8f7 - Lower end_time and raise min_parallel for sample tests to stop timeouts in debug testing.
• 2296cb21 - Electro-thermal-mechanical simulation, on the die and powder geometry only, Refs #9
• b963e6e1 - Example engineering scale yttria block input file, one way coupling, Refs #9
• 16a22c23 - Add new phase-field example input file with intrinsic defects of Y and O...
• f260c8d1 - Add tests file for marmot examples and add comments to old phase-field example file. Ref #19
• 53db3de3 - Add demonstration engineering scale files with mechanics included, Refs #9
• 6270c150 - Initial Dr Sinter mesh file with electrodes for engineering simulation.
• 268e2eee - Mesh journal file, input file for complete Dr. Sinter geometry,
• c798ac73 - Add Dr. Sinter data extraction script and example data (empty die) (#21)
• 93994edd - Working with input file order of the thermal contact blocks
• ca69b7ec - Address review comments (#21)
• bcdb2e13 - Add multi-app example input files with one-way coupling from engineering scale...
• 61b51eae - Add multiapp one-way coupling examples to tests file. Ref #9
• 3b407603 - Add mechanics, mechanical contact to the complete dr. sinter geometry
• 0fdd64e7 - update pressure BCs
• e8d7d2da - Change upper bound temperature checks to warnings to allow simulation to proceed, Refs #12
• 8fd88325 - Mechanics only model with temperature dependent yield stress in plasticity...
• 7a34b626 - single block isoPlastic model with temperature dependent yield stress....
• dd27f533 - Add yttira block with two way coupling to/from updated phase-field model Ref #9
• 292d5b1c - Clean up multi-app one-way coupling examples Ref #9
• 7074509e - Add multi-app two-way coupling example with lots of particles in PF app. Ref #9
• 9f97041d - Transition SideFluxIntegral to SideDiffusiveFluxIntegral (#23)
• e06afb4d - Modify sideset name in dr sinter nodalcontact mesh (#20)
• 6058abce - Add two way phase field coupling prototype (without controls) (#20)
• 508e260f - Add one way phase field coupling electrothermal engineering model (with controls) (#20)
• 43add6fc - Fixup from #26 comments
• a1d781fc - Fixup from #25 comments
• a7011e59 - Add two way coupling (single location) prototype with lots of particles (#20)
• 02ddffd0 - Update multiapp main apps to use catch_up, four particle microapp versions, Closes #9
• 0144301f - Be more specific about which two_block image we want (#24)
• 020c73f0 - Move sps example files to new examples/sps folder (#5)
• fe1538fc - Find and replace FreyaApp with MalamuteApp (#5)
• 0481a71a - Enable electromagnetics, contact, phase field, and tensor mechanics modules (#5)
• abfbbae9 - Add MALAMUTE headers to sps source (#5)
• 93bda766 - More Freya find and replace (#5)
• a4674c82 - Fixup documentation and SQA builds (#5)
• 5a821cf5 - Convert test spec issue numbers from Freya to MALAMUTE (#5)
• a2937552 - Fixup radiation heat loss test due to CIVET changes (#29)
• aa53c63c - Fixup deprecated input file objects and parameters
• ab83aa3a - Fix thermal eigenstrain classes (#000)
• 2075d440 - Update thermal eigenstrain API (#000)
• 0738cc20 - Deduplicate classes (#000)
• 1d361d2f - Removing unused parameters. #31
• 3e90332d - Moving second_order = true to outside the generator
• af3645f7 - Update oneway_coupling_demo_fcn_electricpotential.i
• f64f04db - Convert ConductivityLaplacian instances to ADMatDiffusion (#32)

Compare with previous version

[moosebuild]

CIVET Testing summary for f64f04d

Precheck : Failed : Clang format
Documentation : Canceled by user
Mac Test : Canceled by user
Test : Canceled by user
Test Debug : Canceled by user
Non unity build : Canceled by user
Coverage : Canceled by user

[moosebuild]

In GitLab by @cticenhour on Jun 30, 2022, 15:34

added 1 commit

• d347be9a - Perform a clang-format

Compare with previous version

[moosebuild]

Job Documentation on b622ab9 wanted to post the following:

View the site here

This comment will be updated on new commits.

[moosebuild]

CIVET Testing summary for d347be9

Precheck : Allowed to fail : Size check
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Coverage : Passed

[moosebuild]

In GitLab by @cticenhour on Jun 30, 2022, 16:13

added 3 commits

• af9c8182 - Fixup deprecated multiapp to/from parameters
• 7f0a1289 - Fixup deprecated component parameter in ADPressure
• ad383883 - Increase minimum required malamute code coverage to 78

Compare with previous version

[moosebuild]

CIVET Testing summary for ad38388

Precheck : Allowed to fail : Size check
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Test deprecated : Passed
Coverage : Passed

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:32

Commented on doc/config.yml line 57

Just incidental reordering here? Or is the documentation system order-dependent?

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:32

Commented on examples/sps/marmot/sps_elec_2D.i line 1

we might want to rename this folder from marmot to something like microstructure to avoid any issues of apparent application conflict in case we try to open source this repository

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:32

Commented on examples/sps/multiapp/diemodel/electrothermomechs/simple_geometries/run_isoPlastic_all_temperature.sh line 5

Did you intend to check in this shell script to generate these runs? Would this set of temperature dependent runs be better as a tests type file instead of a shell script?

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:32

Commented on examples/sps/multiapp/electrothermal_with_phase_field/oneway_controls/engineering_scale_electrothermal_oneway_controls.i line 951

Is there a way to use the RunApp check input on these two files? Maybe even with "turning off" the multiapp to save time?

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:32

Commented on examples/sps/multiapp/electrothermal_with_phase_field/twoway_initial_prototype/engineering_scale_electrothermal_twoway_prototype.i line 962

Same check input RunApp test request here as for theoneway_controls folder

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:46

Commented on examples/sps/multiapp/yttria_thermoelectric/reference_residual/function_electricpotential/tests line 32

Are any of these tests duplicates of the ones in the oneway_coupling or other folders? If yes, should we replace some of the input files with symlinks?

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:47

Commented on scripts/drsinter_data_extraction.py line 8

2021 or 2022?

[moosebuild]

In GitLab by @sapitts on Jul 11, 2022, 17:51

I had a couple of hopefully quick questions: the most pressing is about the shell script inclusions. Other than those minor things, this merge request looks good to me

[moosebuild]

In GitLab by @cticenhour on Jul 12, 2022, 08:57

Commented on scripts/drsinter_data_extraction.py line 8

Oops I should have updated this to read 2021-2022. This needs to be done across all of MALAMUTE, so I will put it in a future PR so that it's done all at once. EDIT: I will just add it as a commit here - no sense being silly about it :)

[moosebuild]

In GitLab by @cticenhour on Jul 12, 2022, 08:59

Commented on examples/sps/marmot/sps_elec_2D.i line 1

Will do!

[moosebuild]

In GitLab by @cticenhour on Jul 12, 2022, 10:53

Commented on examples/sps/multiapp/diemodel/electrothermomechs/simple_geometries/run_isoPlastic_all_temperature.sh line 5

I intended to check this in insofar as it was already in the files I was moving from Freya - I only adjusted the name of the app to ensure it could still be useful. If you'd like me to make a series of dependent tests to confirm the temperature dependence I can. Might need your help with the gold files.

[moosebuild]

In GitLab by @cticenhour on Jul 12, 2022, 10:54

Commented on examples/sps/multiapp/electrothermal_with_phase_field/oneway_controls/engineering_scale_electrothermal_oneway_controls.i line 951

I'll double-check to see if there's an active parameter in the multiapp, but I thought we did a RunApp with at least one other multi-app input, so maybe we can just test it as is.

[moosebuild]

In GitLab by @cticenhour on Jul 12, 2022, 10:55

Commented on examples/sps/multiapp/yttria_thermoelectric/reference_residual/function_electricpotential/tests line 32

I will diff some of these to confirm we're not populating too many duplicates.

[moosebuild]

In GitLab by @sapitts on Jul 12, 2022, 11:47

Commented on examples/sps/multiapp/diemodel/electrothermomechs/simple_geometries/run_isoPlastic_all_temperature.sh line 5

my main concern was about checking in a shell script; if that's okay to do (and presumably is since it was already in Freya), I'd be glad to merge this in as is. I can take on migrating this capability from shell script to run tests in a separate merge request. Would you be willing to make an issue for converting this script to run tests and assign that issue to me please?

[moosebuild]

In GitLab by @cticenhour on Jul 12, 2022, 13:55

Commented on examples/sps/multiapp/diemodel/electrothermomechs/simple_geometries/run_isoPlastic_all_temperature.sh line 5

I do not mind checking in a shell script like this, when its only running the final compiled app and nothing else. I will post another message here when that issue is made.

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 09:06

Commented on examples/sps/multiapp/diemodel/electrothermomechs/simple_geometries/run_isoPlastic_all_temperature.sh line 5

The new issue is https://hpcgitlab.hpc.inl.gov/idaholab/malamute/-/issues/33

Please feel free to edit and add to it as you see fit!

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 09:07

Commented on doc/config.yml line 57

Not order dependent at all - I just wanted the modules to be in semi-alphabetical order for my own readability, though I realize I screwed up the order for EM and contact :joy:

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 21:49

Commented on examples/sps/marmot/sps_elec_2D.i line 1

changed this line in version 13 of the diff

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 21:49

Commented on scripts/drsinter_data_extraction.py line 8

changed this line in version 13 of the diff

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 21:49

added 4 commits

• 70024f22 - Address review comments (!5)
• 33ec66fe - Clean up unit test sample file and placeholder and adjust README
• 057dbcdf - Update malamute copyright notice to include 2022
• 0f365ae2 - Save some space by removing duplicate mesh files

Compare with previous version

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 21:49

resolved all threads

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 21:54

@sapitts Addressed most of your comments in 70024f22, cleaned up some unit test files from the MALAMUTE template that should have been deleted a while ago in 33ec66fe, updated the copyright notice years in 057dbcdf, and removed some duplicate Dr Sinter mesh files to save some space (just over 32MB down to 18MB!) in 0f365ae2. I think we're ready for another round of review.

[moosebuild]

Job Coverage on b622ab9 wanted to post the following:

Coverage

	f74fea	#5 b622ab
	Total	Total	+/-	New
Rate	67.17%	77.79%	+10.62%	96.67%
Hits	491	872	+381	377
Misses	240	249	+9	13

Diff coverage report

Full coverage report

This comment will be updated on new commits.

[moosebuild]

In GitLab by @cticenhour on Jul 13, 2022, 22:10

added 1 commit

• ce72d55c - Drop coverage to 77

Compare with previous version

[moosebuild]

CIVET Testing summary for 0f365ae

Precheck : Allowed to fail : Size check
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Canceled by user
Test deprecated : Canceled by user
Coverage : Failed : verify coverage

[moosebuild]

CIVET Testing summary for ce72d55

Precheck : Allowed to fail : Size check
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Test deprecated : Passed
Coverage : Passed

[moosebuild]

In GitLab by @cticenhour on Jul 14, 2022, 09:34

added 1 commit

• b622ab9a - Remove duplicate tests

Compare with previous version

[moosebuild]

Job Precheck on b622ab9 wanted to post the following:

Warning: This PR changes repo size by 18.00 MiB.

[moosebuild]

CIVET Testing summary for b622ab9

Precheck : Allowed to fail : Size check
Documentation : Passed
Mac Test : Passed
Test : Passed
Test Debug : Passed
Non unity build : Passed
Test deprecated : Passed
Coverage : Passed

[moosebuild]

In GitLab by @sapitts on Jul 14, 2022, 16:13

Commented on README.md line 6

good catch!

[moosebuild]

In GitLab by @sapitts on Jul 14, 2022, 16:13

resolved all threads

[moosebuild]

In GitLab by @sapitts on Jul 14, 2022, 16:13

approved this merge request

[moosebuild]

In GitLab by @sapitts on Jul 14, 2022, 16:13

mentioned in commit 2908ec25382b0fa8fe71292927123d2dcdec51f1