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idaholab / moose

Multiphysics Object Oriented Simulation Environment
https://www.mooseframework.org
GNU Lesser General Public License v2.1
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Installation failed: recipe for target 'all-recursive' failed #13694

Closed luoxiacao closed 5 years ago

luoxiacao commented 5 years ago

I was trying to install MOOSE using the guide from: https://mooseframework.inl.gov/getting_started/installation/ubuntu.html But when I ran the following: ./scripts/update_and_rebuild_libmesh.sh It came with error: make[2]: No rule to make target 'all'. Stop. make[1]: [all-recursive] Error 1 make: *** [all-recursive] Error 1

I have attached the .log file here. Is there anyone that can help me figure out what my problem was and how I can solve the problem, please? Thank you. debug.log

----------- Configuring libMesh -------------

checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /home/luoxia/projects/moose/scripts/../libmesh/build-aux/install-sh -C checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for src/base/libmesh.C... no <<< Configuring build directory for VPATH build >>> checking for perl... /usr/bin/perl checking whether make supports the include directive... yes (GNU style) checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mpicxx accepts -g... yes checking dependency style of mpicxx... gcc3 <<< C++ compiler is unknown but accepted gcc version >>> checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... yes checking dependency style of mpicc... gcc3 checking whether we are using the GNU Fortran compiler... yes checking whether mpif90 accepts -g... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether mpif77 accepts -g... yes checking for a sed that does not truncate output... /bin/sed checking for C++ compiler vendor... gnu checking whether mpicxx supports C++11 features by default... yes <<< Configuring libMesh with methods "opt oprof dbg" >>> <<< Compiler warnings are just warnings >>> <<< Disabling extra paranoid compiler warnings >>> checking for C++11 auto keyword support... yes checking for C++11 range-based for loop support... yes checking for C++11 initializer list support... yes checking for C++11 std::unique_ptr support... yes checking for C++11 std::make_unique workaround support... yes checking for C++11 std::tuple support... yes checking for C++11 lambda support... yes checking for C++11 fixed type enumeration support... yes checking for C++11 fixed type enumeration forward declaration support... yes checking for C++11 override keyword support... yes checking for C++11 move constructor support... yes checking for C++11 deleted functions support... yes checking for C++11 defaulted functions support... yes checking for C++11 nullptr support... yes checking for C++11 'final' keyword support... yes checking for C++11 decltype support... yes checking for C++11 std::begin/end support for arrays... yes checking for C++11 std container erase() functions returning iterators... yes checking for C++11 std::iota algorithm... yes checking for C++11 std::vector::data() API... yes checking for C++11 std::shared_ptr support... yes checking for C++11 rvalue references support... yes checking for C++11 std::to_string() support... yes checking for C++11 constexpr support... yes checking for C++11 variadic template support... yes checking for C++11 alias declarations support... yes checking for C++11 std::array... yes checking for C++11 std::isnan... yes checking for C++11 std::isinf... yes checking for C++14 std::make_unique support... yes checking for C++11 std::regex support... yes checking for C++11 support... yes checking for C++11 support... yes checking for C++11 support... yes checking for C++11 std::asinh support in ... yes checking for C++11 std::acosh support in ... yes checking for C++11 std::atanh support in ... yes checking for C++11 std::asinh(complex) support in ... yes checking for C++11 std::acosh(complex) support in ... yes checking for C++11 std::atanh(complex) support in ... yes checking for C++11 std::erf support in ... yes checking for C++17 fallthrough attribute support... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... yes checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for mpif77 option to produce PIC... -fPIC checking if mpif77 PIC flag -fPIC works... yes checking if mpif77 static flag -static works... yes checking if mpif77 supports -c -o file.o... yes checking if mpif77 supports -c -o file.o... (cached) yes checking whether the mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for mpif90 option to produce PIC... -fPIC checking if mpif90 PIC flag -fPIC works... yes checking if mpif90 static flag -static works... yes checking if mpif90 supports -c -o file.o... yes checking if mpif90 supports -c -o file.o... (cached) yes checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking Major version... 1 checking Minor version... 5 checking Point version... 0 checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /bin/sed checking for pkg-config... /usr/bin/pkg-config checking whether the compiler implements namespaces... yes

------- Configuring compiler features -------

<<< Default floating point is double precision (double) >>> checking for C/C++ restrict keyword... __restrict checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes <<< Configuring library with getpwuid >>> <<< Configuring library with exception throwing support >>> <<< Configuring library with compile timestamps >>> checking size of short int... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of size_t... 8 checking size of long int... 8 checking size of float... 4 checking size of double... 8 checking size of void *... 8 checking size of function_pointer... 8 checking whether the compiler supports Run-Time Type Identification... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking csignal usability... yes checking csignal presence... yes checking for csignal... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking whether the compiler has locale... yes checking whether the compiler has stringstream... yes checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking xmmintrin.h usability... yes checking xmmintrin.h presence... yes checking for xmmintrin.h... yes checking whether sigaction is declared... yes checking for mkdir with two arguments... yes checking direct.h usability... no checking direct.h presence... no checking for direct.h... no checking whether _mkdir is declared... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking whether the compiler supports std::unordered_multimap... yes checking whether the compiler supports std::unordered_map... yes checking whether the compiler supports std::unordered_multiset... yes checking whether the compiler supports std::unordered_set... yes checking whether the compiler supports std::hash... yes checking for library containing dlopen... -ldl checking whether the c++ compiler supports dlopen/dlsym/dlclose... yes checking whether the compiler supports GCC C++ ABI name demangling... yes checking whether the c++ compiler supports glibc backtrace... yes checking if errno.h can be wrapped in namespace... yes

----- Done configuring compiler features ----

----- Configuring core library features -----

configuring gdb command... "gdb"

INFO: Disabling library warnings <<< Configuring library without warnings <<< <<< Configuring library with deprecated code support >>> <<< Configuring library with forward declared enumerations >>> <<< Configuring library to require ``include "libmesh/etc.h"'' style >>> <<< Configuring library to keep names in libMesh namespace >>> configuring size of boundary_id... 2 configuring size of dof_id... 4 configuring size of processor_id... 4 configuring size of subdomain_id... 2 <<< Configuring library with unique id support >>> configuring size of unique_id... 8 <<< Configuring library with AMR support >>> <<< Configuring library with variational smoother support >>> <<< Configuring library with periodic BC support >>> <<< Configuring library with Dirichlet constraint support >>> <<< Configuring library to use ghosted local vectors >>> <<< Configuring library to store node valence >>> <<< Configuring library with higher order p-FEM shapes >>> <<< Configuring library with second derivatives >>> <<< Configuring library with real number support >>> <<< Configuring library with reference counting support >>> <<< Configuring library example suite support >>>

-- Done configuring core library features ---

----- Configuring for optional packages -----

checking for built-in XDR support... yes checking for boostlib >= 1.57.0... yes <<< Using external boost installation >>> checking for boost::movelib::unique_ptr support... yes checking /opt/moose/petsc-3.10.5/mpich-3.3_gcc-8.3.0-opt/include/petscversion.h usability... yes checking /opt/moose/petsc-3.10.5/mpich-3.3_gcc-8.3.0-opt/include/petscversion.h presence... yes checking for /opt/moose/petsc-3.10.5/mpich-3.3_gcc-8.3.0-opt/include/petscversion.h... yes <<< Attempting to configure library with MPI from PETSC config... >>> <<< Found PETSc 3.10.5 installation in /opt/moose/petsc-3.10.5/mpich-3.3_gcc-8.3.0-opt ... >>> checking whether we can compile a trivial PETSc program... yes checking for TAO support via PETSc... yes checking /usr/lib/slepc/include/slepcversion.h usability... no checking /usr/lib/slepc/include/slepcversion.h presence... no checking for /usr/lib/slepc/include/slepcversion.h... no <<< Invalid "$SLEPC_DIR" detected (slepcversion.h not found). SLEPc disabled. >>> checking Whether MPI is available for Trilinos... yes checking Whether Real precision is compatible with Trilinos... yes <<< User requested thread model: openmp >>> checking for OpenMP flag of C++ compiler... -fopenmp <<< Configuring library with OpenMP support >>> checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes <<< Configuring library with pthread support >>> <<< Found thread model: pthread >>> <<< Laspack support is disabled, configure with --disable-strict-lgpl to enable it >>> <<< The space filling curves partitioner is disabled, configure with --disable-strict-lgpl to enable it >>> checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for gzopen in -lz... yes <<< Configuring library with gzstreams support >>> checking for bzip2... bzip2 checking for bunzip2... bunzip2 <<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>> checking for xz... xz <<< Using xz for writing/reading compressed .xz files >>> <<< Testing X11 headers with -I/usr/include >>> checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking size of void *... (cached) 8 <<< Configuring library with Tecplot TecIO support >>> <<< Configuring library with Metis support >>> checking for thread local storage (TLS) class... __thread <<< Configuring library with PETSc Parmetis support >>> checking for doxygen... /opt/moose/doxygen-1.8.14/bin/doxygen checking for dot... /opt/moose/graphviz-2.38.0/bin/dot <<< Tetgen support is disabled, configure with --disable-strict-lgpl to enable it >>> <<< Triangle meshing support is disabled, configure with --disable-strict-lgpl to enable it >>> checking for library containing sqrt... none required checking for library containing trunc... none required checking for library containing cos... none required <<< Configuring library with Qhull version 2012.1 support >>> <<< Configuring library with GMV support >>> checking /vtkConfigure.h usability... no checking /vtkConfigure.h presence... no checking for /vtkConfigure.h... no VTK header files not found! <<< Configuring library without VTK support >>> Testing EIGEN_INC=/usr/include checking /usr/include/Eigen/Eigen usability... no checking /usr/include/Eigen/Eigen presence... no checking for /usr/include/Eigen/Eigen... no <<< external Eigen header files not found, using Eigen from ./contrib >>> checking Eigen/Dense usability... yes checking Eigen/Dense presence... yes checking for Eigen/Dense... yes checking Eigen/Sparse usability... yes checking Eigen/Sparse presence... yes checking for Eigen/Sparse... yes checking for eigen - version >= 3.1.2... yes <<< Configuring library with Eigen support >>> checking /usr/include/glpk.h usability... no checking /usr/include/glpk.h presence... no checking for /usr/include/glpk.h... no GLPK header files not found! checking for valid nlopt installation... no <<< Required header files not found, Cap'n Proto support disabled. >>> <<< Configuring library with NetCDF version 4 support >>> defining -DNOT_NETCDF4 for our Exodus build <<< Configuring library with Exodus version v5.22 support >>> <<< Configuring library with Exodus Fortran API >>> <<< Configuring library with Nemesis version v5.22 support >>> <<< Configuring library with libHilbert support >>> checking for a sed that does not truncate output... (cached) /bin/sed checking for bison... no checking for byacc... no <<< Configuring library with fparser support (release version) >>> checking for dlopen support... (cached) yes <<< Configuring library with fparser JIT compilation support >>> checking for cppunit-config... none checking whether we can build a trivial CppUnit program... no <<< Configuring library with nanoflann KDtree support >>> <<< Configuring library with MetaPhysicL support >>>

--- Done configuring for optional packages ---

removing duplicate include paths... removing duplicate libraries... checking for git... /usr/bin/git checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating include/libmesh/Makefile config.status: creating contrib/Makefile config.status: creating contrib/utils/Makefile config.status: creating contrib/utils/Make.common config.status: creating tests/Makefile config.status: creating contrib/utils/libmesh.pc config.status: creating contrib/utils/libmesh-opt.pc config.status: creating contrib/utils/libmesh-dbg.pc config.status: creating contrib/utils/libmesh-devel.pc config.status: creating contrib/utils/libmesh-prof.pc config.status: creating contrib/utils/libmesh-oprof.pc config.status: creating doc/Doxyfile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating contrib/bin/libmesh-config config.status: creating contrib/bin/create_libmesh_release config.status: creating doc/dot config.status: creating tests/run_unit_tests.sh config.status: creating contrib/boost/include/Makefile config.status: creating contrib/laspack/Makefile config.status: creating contrib/sfcurves/Makefile config.status: creating contrib/gzstream/Makefile config.status: creating contrib/tecplot/tecio/Makefile config.status: creating contrib/tecplot/binary/Makefile config.status: creating contrib/metis/Makefile config.status: creating contrib/parmetis/Makefile config.status: creating contrib/tetgen/Makefile config.status: creating contrib/triangle/Makefile config.status: creating contrib/qhull/qhull/Makefile config.status: creating contrib/gmv/Makefile config.status: creating contrib/eigen/eigen/Makefile config.status: creating contrib/capnproto/Makefile config.status: creating contrib/exodusii/v5.09/Makefile config.status: creating contrib/exodusii/v5.22/exodus/Makefile config.status: creating contrib/nemesis/v3.09/Makefile config.status: creating contrib/nemesis/v5.22/nemesis/Makefile config.status: creating contrib/libHilbert/Makefile config.status: creating contrib/fparser/Makefile config.status: creating contrib/fparser/extrasrc/Makefile config.status: creating contrib/nanoflann/Makefile config.status: creating examples/introduction/introduction_ex1/Makefile config.status: creating examples/introduction/introduction_ex2/Makefile config.status: creating examples/introduction/introduction_ex3/Makefile config.status: creating examples/introduction/introduction_ex4/Makefile config.status: creating examples/introduction/introduction_ex5/Makefile config.status: creating examples/adaptivity/adaptivity_ex1/Makefile config.status: creating examples/adaptivity/adaptivity_ex2/Makefile config.status: creating examples/adaptivity/adaptivity_ex3/Makefile config.status: creating examples/adaptivity/adaptivity_ex4/Makefile config.status: creating examples/adaptivity/adaptivity_ex5/Makefile config.status: creating examples/adjoints/adjoints_ex1/Makefile config.status: creating examples/adjoints/adjoints_ex2/Makefile config.status: creating examples/adjoints/adjoints_ex3/Makefile config.status: creating examples/adjoints/adjoints_ex4/Makefile config.status: creating examples/adjoints/adjoints_ex5/Makefile config.status: creating examples/adjoints/adjoints_ex6/Makefile config.status: creating examples/eigenproblems/eigenproblems_ex1/Makefile config.status: creating examples/eigenproblems/eigenproblems_ex2/Makefile config.status: creating examples/eigenproblems/eigenproblems_ex3/Makefile config.status: creating examples/fem_system/fem_system_ex1/Makefile config.status: creating examples/fem_system/fem_system_ex2/Makefile config.status: creating examples/fem_system/fem_system_ex3/Makefile config.status: creating examples/fem_system/fem_system_ex4/Makefile config.status: creating examples/solution_transfer/solution_transfer_ex1/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex1/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex2/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex3/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex4/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex5/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex6/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex7/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex8/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex9/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex10/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex11/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex12/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex13/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex14/Makefile config.status: creating examples/optimization/optimization_ex1/Makefile config.status: creating examples/optimization/optimization_ex2/Makefile config.status: creating examples/subdomains/subdomains_ex1/Makefile config.status: creating examples/subdomains/subdomains_ex2/Makefile config.status: creating examples/subdomains/subdomains_ex3/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex1/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex2/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex3/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex4/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex5/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex6/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex7/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex8/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex9/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex1/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex2/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex3/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex4/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex5/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex6/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex7/Makefile config.status: creating examples/transient/transient_ex1/Makefile config.status: creating examples/transient/transient_ex2/Makefile config.status: creating examples/vector_fe/vector_fe_ex1/Makefile config.status: creating examples/vector_fe/vector_fe_ex2/Makefile config.status: creating examples/vector_fe/vector_fe_ex3/Makefile config.status: creating examples/vector_fe/vector_fe_ex4/Makefile config.status: creating examples/Makefile config.status: creating include/libmesh_config.h.tmp config.status: executing include/libmesh_config.h commands config.status: creating include/libmesh_config.h - prefix LIBMESH for include/libmesh_config.h.tmp defines config.status: executing depfiles commands config.status: executing libtool commands === configuring in contrib/netcdf/v4 (/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4) configure: running /bin/bash /home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4/configure --disable-option-checking '--prefix=/home/luoxia/projects/moose/scripts/../libmesh/installed' 'INSTALL=/home/luoxia/projects/moose/scripts/../libmesh/build-aux/install-sh -C' '--with-methods=opt oprof dbg' '--enable-silent-rules' '--enable-unique-id' '--disable-warnings' '--with-thread-model=openmp' '--disable-maintainer-mode' '--enable-petsc-hypre-required' '--enable-metaphysicl-required' 'CXX=mpicxx' 'CC=mpicc' 'FC=mpif90' 'F77=mpif77' 'METHODS=opt oprof dbg' 'PETSC_DIR=/opt/moose/petsc-3.10.5/mpich-3.3_gcc-8.3.0-opt' '--disable-netcdf-4' '--disable-dap' '--disable-curl' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= ' 'LIBS= -ldl ' --cache-file=/dev/null --srcdir=/home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4 configure: netCDF 4.6.2 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /home/luoxia/projects/moose/scripts/../libmesh/build-aux/install-sh -C checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking for valgrind... no checking if fsync support is enabled... no checking if jna bug workaround is enabled... no checking whether we should build netCDF-4... no checking do we require hdf5 dynamic-loading support... yes checking whether reading of HDF4 SD files is to be enabled... no checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a user specified program to run mpi programs... mpiexec checking whether a default chunk size in bytes was specified... 4194304 checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 checking whether a number of chunks for the default per-variable cache was specified... 10 checking whether a default file cache size for HDF5 was specified... 4194304 checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether nc_set_log_level() function is included (will do nothing unless enable-logging is also used)... yes checking whether DAP client(s) are to be built... no checking for gcc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... yes checking for curl_easy_setopt in -lcurl... yes checking whether dap remote testing should be enabled (default off)... no checking whether dap remote authorization testing should be enabled (default off)... no checking whether netcdf4 group names for DAP2 should be enabled (default on)... yes configure: DAP2 groups is being disabled because DAP2 support is disabled or netcdf-4 disabled checking which remote test server(s) to use... 149.165.169.123:8080,remotetest.unidata.ucar.edu checking whether the time-consuming dap tests should be enabled (default off)... no checking whether to enable strict null-byte header padding when reading (default off)... no checking whether FFIO will be used... no checking whether STDIO will be used... no checking whether examples should be built... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump/nccopy should be built... yes checking whether test should be built and run... no checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . checking Extra values for _NCProperties... checking whether user-defined format 0 was specified... checking whether a magic number for user-defined format 0 was specified... checking whether user-defined format 1 was specified... checking whether a magic number for user-defined format 1 was specified... checking whether a default cache preemption for HDF5 was specified... 0.75 configure: finding C compiler checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking for an ANSI C-conforming const... yes checking whether CURLOPT_USERNAME is defined... yes checking whether CURLOPT_PASSWORD is defined... yes checking whether CURLOPT_KEYPASSWD is defined... yes checking whether CURLINFO_RESPONSE_CODE is defined... yes checking whether CURLOPT_BUFFERSIZE is defined... yes checking whether CURLOPT_TCP_KEEPALIVE is defined... yes configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: finding other utilities checking for m4... m4 checking for doxygen... doxygen checking for dot... dot checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS...
checking CC CFLAGS... mpicc checking type mpicc... mpicc is /opt/moose/mpich-3.3/gcc-8.3.0/bin/mpicc checking CXX... mpicxx checking CXXFLAGS... checking type mpicxx... mpicxx is /opt/moose/mpich-3.3/gcc-8.3.0/bin/mpicxx checking FC... mpif90 checking FFLAGS... checking type mpif90... mpif90 is /opt/moose/mpich-3.3/gcc-8.3.0/bin/mpif90 checking F90... mpif90 checking FCFLAGS... checking type mpif90... mpif90 is /opt/moose/mpich-3.3/gcc-8.3.0/bin/mpif90 checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... configure: checking types, headers, and functions checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking for ANSI C header files... (cached) yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking ftw.h usability... yes checking ftw.h presence... yes checking for ftw.h... yes checking for strlcat... no checking for snprintf... yes checking for strdup... yes checking for strtoll... yes checking for strtoull... yes checking for mkstemp... yes checking for mktemp... yes checking for random... yes checking for getrlimit... yes checking for gettimeofday... yes checking for fsync... yes checking for MPI_Comm_f2c... no checking for MPI_Info_f2c... no checking for memmove... yes checking for getpagesize... yes checking for sysconf... yes checking whether mmap is enabled for in-memory files... no checking for mmap... yes checking for mremap... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... (cached) yes checking for ssize_t... yes checking for schar... no checking for uchar... no checking for longlong... no checking for ushort... yes checking for uint... yes checking for int64... no checking for uint64... no checking for off_t... yes checking for uintptr_t... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking size of unsigned long long... 8 checking whether CDF5 support should be disabled... yes checking size of unsigned char... 1 checking size of ushort... 2 checking size of uint... 4 checking size of ushort... (cached) 2 checking size of uint... (cached) 4 checking size of ssize_t... 8 checking size of void*... 8 checking for floor in -lm... yes checking whether parallel I/O is enabled for netcdf-4... no checking whether parallel I/O for classic files is to be enabled... no checking what to call the output of the ftpbin target... binary-netcdf-4.6.2_nc3.tar mpif90 mpicxx checking if libtool needs -no-undefined flag to build shared libraries... no checking value of LIBS... -lm -ldl checking If compilation is for use with JNA... no checking whether large metadata performance testing should be run... no checking whether filter testing should be run... yes configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating test_common.sh config.status: creating nc_test4/findplugin.sh config.status: creating examples/C/findplugin.sh config.status: creating ncdap_test/findtestserver.c config.status: creating dap4_test/findtestserver4.c config.status: creating nc_test4/run_par_test.sh config.status: creating nc_test4/run_par_bm_test.sh config.status: creating nc-config config.status: creating Makefile config.status: creating netcdf.pc config.status: creating libnetcdf.settings config.status: creating postinstall.sh config.status: creating include/netcdf_meta.h config.status: creating include/Makefile config.status: creating h5_test/Makefile config.status: creating hdf4_test/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating libhdf5/Makefile config.status: creating libsrcp/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen3/Makefile config.status: creating ncgen/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating oc2/Makefile config.status: creating libdap2/Makefile config.status: creating libdap4/Makefile config.status: creating libhdf4/Makefile config.status: creating libdispatch/Makefile config.status: creating liblib/Makefile config.status: creating ncdump/cdl/Makefile config.status: creating ncdump/expected/Makefile config.status: creating docs/Makefile config.status: creating docs/images/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdap_test/Makefile config.status: creating ncdap_test/testdata3/Makefile config.status: creating ncdap_test/expected3/Makefile config.status: creating ncdap_test/expectremote3/Makefile config.status: creating dap4_test/Makefile config.status: creating plugins/Makefile config.status: creating config.h config.status: linking /home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4/nc_test4/ref_hdf5_compat1.nc to nc_test4/ref_hdf5_compat1.nc config.status: linking /home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4/nc_test4/ref_hdf5_compat2.nc to nc_test4/ref_hdf5_compat2.nc config.status: linking /home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4/nc_test4/ref_hdf5_compat3.nc to nc_test4/ref_hdf5_compat3.nc config.status: linking /home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4/hdf4_test/ref_chunked.hdf4 to hdf4_test/ref_chunked.hdf4 config.status: linking /home/luoxia/projects/moose/scripts/../libmesh/contrib/netcdf/v4/hdf4_test/ref_contiguous.hdf4 to hdf4_test/ref_contiguous.hdf4 config.status: executing libtool commands

NetCDF C Configuration Summary

==============================

General

NetCDF Version: 4.6.2 Configured On: Thu Jul 4 20:41:55 PDT 2019 Host System: x86_64-pc-linux-gnu Build Directory: /home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4 Install Prefix: /home/luoxia/projects/moose/scripts/../libmesh/installed

Compiling Options

C Compiler: /opt/moose/mpich-3.3/gcc-8.3.0/bin/mpicc CFLAGS:
CPPFLAGS:
LDFLAGS:
AM_CFLAGS:
AM_CPPFLAGS:
AM_LDFLAGS:
Shared Library: yes Static Library: yes Extra libraries: -lm -ldl

Features

NetCDF-2 API: yes HDF4 Support: no NetCDF-4 API: no NC-4 Parallel Support: no PnetCDF Support: no DAP2 Support: no DAP4 Support: no Diskless Support: yes MMap Support: no JNA Support: no CDF5 Support: yes ERANGE Fill Support: no Relaxed Boundary Check: yes === configuring in contrib/metaphysicl (/home/luoxia/projects/moose/libmesh/build/contrib/metaphysicl) configure: running /bin/bash /home/luoxia/projects/moose/scripts/../libmesh/contrib/metaphysicl/configure --disable-option-checking '--prefix=/home/luoxia/projects/moose/scripts/../libmesh/installed' 'INSTALL=/home/luoxia/projects/moose/scripts/../libmesh/build-aux/install-sh -C' '--with-methods=opt oprof dbg' '--enable-silent-rules' '--enable-unique-id' '--disable-warnings' '--with-thread-model=openmp' '--disable-maintainer-mode' '--enable-petsc-hypre-required' '--enable-metaphysicl-required' 'CXX=mpicxx' 'CC=mpicc' 'FC=mpif90' 'F77=mpif77' 'METHODS=opt oprof dbg' 'PETSC_DIR=/opt/moose/petsc-3.10.5/mpich-3.3_gcc-8.3.0-opt' '--disable-netcdf-4' '--disable-dap' '--disable-curl' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= ' 'LIBS= -ldl ' --cache-file=/dev/null --srcdir=/home/luoxia/projects/moose/scripts/../libmesh/contrib/metaphysicl checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /home/luoxia/projects/moose/scripts/../libmesh/build-aux/install-sh -C checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... yes checking dependency style of mpicc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking Major version... 0 checking Minor version... 5 checking Point version... 0 checking for gcc... (cached) mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking dependency style of mpicc... (cached) gcc3 checking whether we are using the GNU C++ compiler... yes checking whether mpicxx accepts -g... yes checking dependency style of mpicxx... gcc3 checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... yes checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mpif90 option to produce PIC... -fPIC checking if mpif90 PIC flag -fPIC works... yes checking if mpif90 static flag -static works... yes checking if mpif90 supports -c -o file.o... yes checking if mpif90 supports -c -o file.o... (cached) yes checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether mpicxx supports C++14 features with -std=c++14... yes checking CXXFLAGS for maximum warnings... -Wall checking masa.h usability... no checking masa.h presence... no checking for masa.h... no configure: optional MASA library not found checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for Boost headers version >= 1.47.0... yes checking for Boost's header version... 1_61 checking for the toolset name used by Boost for mpicxx -std=c++14... checking for the flags needed to use pthreads... -pthread configure: /vexcl/vexcl.hpp not found configure: /include/vexcl/vexcl.hpp not found checking whether we are using the Microsoft C++ compiler... no checking CL/cl.h usability... no checking CL/cl.h presence... no checking for CL/cl.h... no checking OpenCL/cl.h usability... no checking OpenCL/cl.h presence... no checking for OpenCL/cl.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for OpenCL library... no checking boost/system/error_code.hpp usability... yes checking boost/system/error_code.hpp presence... yes checking for boost/system/error_code.hpp... yes checking for the Boost system library... no checking boost/chrono.hpp usability... no checking boost/chrono.hpp presence... no checking for boost/chrono.hpp... no Making all in include make[1]: Entering directory '/home/luoxia/projects/moose/libmesh/build/include' make all-recursive make[2]: Entering directory '/home/luoxia/projects/moose/libmesh/build/include' Making all in libmesh make[3]: Entering directory '/home/luoxia/projects/moose/libmesh/build/include/libmesh' GEN auto_ptr.h GEN default_coupling.h GEN dirichlet_boundaries.h GEN dof_map.h GEN dof_object.h GEN factory.h GEN getpot.h GEN ghost_point_neighbors.h GEN ghosting_functor.h GEN id_types.h GEN libmesh.h GEN libmesh_C_isnan.h GEN libmesh_augment_std_namespace.h GEN libmesh_base.h GEN libmesh_exceptions.h GEN libmesh_common.h GEN libmesh_singleton.h GEN libmesh_logging.h GEN libmesh_documentation.h GEN libmesh_version.h GEN multi_predicates.h GEN periodic_boundaries.h GEN periodic_boundary.h GEN periodic_boundary_base.h GEN point_neighbor_coupling.h GEN print_trace.h GEN reference_counted_object.h GEN reference_counter.h GEN sibling_coupling.h GEN sparsity_pattern.h GEN single_predicates.h GEN variable.h GEN variant_filter_iterator.h GEN enum_convergence_flags.h GEN enum_eigen_solver_type.h GEN enum_elem_quality.h GEN enum_elem_type.h GEN enum_error_estimator_type.h GEN enum_fe_family.h GEN enum_inf_map_type.h GEN enum_io_package.h GEN enum_order.h GEN enum_norm_type.h GEN enum_parallel_type.h GEN enum_point_locator_type.h GEN enum_preconditioner_type.h GEN enum_quadrature_type.h GEN enum_solver_package.h GEN enum_solver_type.h GEN enum_xdr_mode.h GEN enum_subset_solve_mode.h GEN adjoint_refinement_estimator.h GEN discontinuity_measure.h GEN adjoint_residual_error_estimator.h GEN error_estimator.h GEN exact_error_estimator.h GEN exact_solution.h GEN fourth_error_estimators.h GEN hp_selector.h GEN hp_coarsentest.h GEN jump_error_estimator.h GEN hp_singular.h GEN kelly_error_estimator.h GEN patch_recovery_error_estimator.h GEN weighted_patch_recovery_error_estimator.h GEN uniform_refinement_estimator.h GEN fe.h GEN fe_abstract.h GEN fe_base.h GEN fe_compute_data.h GEN fe_interface.h GEN fe_macro.h GEN fe_transformation_base.h GEN fe_map.h GEN fe_type.h GEN fe_xyz_map.h GEN hcurl_fe_transformation.h GEN inf_fe.h GEN h1_fe_transformation.h GEN inf_fe_instantiate_1D.h GEN inf_fe_instantiate_2D.h GEN inf_fe_instantiate_3D.h GEN inf_fe_macro.h GEN bounding_box.h GEN cell_hex.h GEN cell.h GEN cell_hex20.h GEN cell_hex27.h GEN cell_hex8.h GEN cell_inf.h GEN cell_inf_hex16.h GEN cell_inf_hex.h GEN cell_inf_hex18.h GEN cell_inf_hex8.h GEN cell_inf_prism12.h GEN cell_inf_prism.h GEN cell_prism.h GEN cell_inf_prism6.h GEN cell_prism15.h GEN cell_prism6.h GEN cell_prism18.h GEN cell_pyramid.h GEN cell_pyramid13.h GEN cell_pyramid14.h GEN cell_tet.h GEN cell_pyramid5.h GEN compare_elems_by_level.h GEN cell_tet4.h GEN cell_tet10.h GEN edge.h GEN edge_edge2.h GEN edge_edge4.h GEN edge_edge3.h GEN edge_inf_edge2.h GEN elem.h GEN elem_cutter.h GEN elem_hash.h GEN elem_quality.h GEN elem_internal.h GEN elem_range.h GEN face.h GEN face_inf_quad.h GEN face_inf_quad4.h GEN face_inf_quad6.h GEN face_quad.h GEN face_quad4.h GEN face_quad4_shell.h GEN face_quad8.h GEN face_quad8_shell.h GEN face_quad9.h GEN face_tri.h GEN face_tri3.h GEN face_tri3_shell.h GEN face_tri3_subdivision.h GEN face_tri6.h GEN node.h GEN node_range.h GEN node_elem.h GEN plane.h GEN point.h GEN reference_elem.h GEN side.h GEN remote_elem.h GEN sphere.h GEN stored_range.h GEN surface.h GEN abaqus_io.h GEN boundary_info.h GEN boundary_mesh.h GEN checkpoint_io.h GEN ensight_io.h GEN distributed_mesh.h GEN exodusII_io.h GEN exodusII_io_helper.h GEN fro_io.h GEN gmsh_io.h GEN gmv_io.h GEN gnuplot_io.h GEN inf_elem_builder.h GEN matlab_io.h GEN medit_io.h GEN mesh.h GEN mesh_base.h GEN mesh_function.h GEN mesh_communication.h GEN mesh_generation.h GEN mesh_input.h GEN mesh_inserter_iterator.h GEN mesh_modification.h GEN mesh_refinement.h GEN mesh_output.h GEN mesh_smoother.h GEN mesh_smoother_laplace.h GEN mesh_serializer.h GEN mesh_subdivision_support.h GEN mesh_smoother_vsmoother.h GEN mesh_tetgen_interface.h GEN mesh_tetgen_wrapper.h GEN mesh_triangle_holes.h GEN mesh_tools.h GEN mesh_triangle_interface.h GEN namebased_io.h GEN nemesis_io.h GEN nemesis_io_helper.h GEN mesh_triangle_wrapper.h GEN off_io.h GEN patch.h GEN parallel_mesh.h GEN replicated_mesh.h GEN postscript_io.h GEN serial_mesh.h GEN sync_refinement_flags.h GEN tecplot_io.h GEN tetgen_io.h GEN ucd_io.h GEN unstructured_mesh.h GEN unv_io.h GEN xdr_io.h GEN vtk_io.h GEN analytic_function.h GEN composite_fem_function.h GEN composite_function.h GEN const_fem_function.h GEN const_function.h GEN coupling_matrix.h GEN dense_matrix.h GEN dense_matrix_base.h GEN dense_matrix_base_impl.h GEN dense_subvector.h GEN dense_matrix_impl.h GEN dense_submatrix.h GEN dense_vector.h GEN dense_vector_base.h GEN distributed_vector.h GEN eigen_preconditioner.h GEN eigen_core_support.h GEN fem_function_base.h GEN eigen_sparse_vector.h GEN eigen_sparse_matrix.h GEN function_base.h GEN laspack_matrix.h GEN laspack_vector.h GEN numeric_vector.h GEN parsed_fem_function.h GEN parsed_fem_function_parameter.h GEN petsc_macro.h GEN parsed_function_parameter.h GEN parsed_function.h GEN petsc_preconditioner.h GEN petsc_solver_exception.h GEN petsc_matrix.h GEN petsc_vector.h GEN preconditioner.h GEN raw_accessor.h GEN refinement_selector.h GEN shell_matrix.h GEN sparse_matrix.h GEN sparse_shell_matrix.h GEN sum_shell_matrix.h GEN tensor_tools.h GEN tensor_shell_matrix.h GEN trilinos_epetra_matrix.h GEN tensor_value.h GEN trilinos_epetra_vector.h GEN trilinos_preconditioner.h GEN tuple_of.h GEN type_n_tensor.h GEN type_tensor.h GEN type_vector.h GEN vector_value.h GEN wrapped_function.h GEN wrapped_functor.h GEN zero_function.h GEN attributes.h GEN communicator.h GEN data_type.h GEN libmesh_call_mpi.h GEN message_tag.h GEN op_function.h GEN packing.h GEN parallel.h GEN parallel_algebra.h GEN parallel_bin_sorter.h GEN parallel_conversion_utils.h GEN parallel_elem.h GEN parallel_ghost_sync.h GEN parallel_hilbert.h GEN parallel_histogram.h GEN parallel_implementation.h GEN parallel_node.h GEN parallel_object.h GEN parallel_only.h GEN parallel_sort.h GEN parallel_sync.h GEN post_wait_copy_buffer.h GEN post_wait_delete_buffer.h GEN post_wait_dereference_tag.h GEN post_wait_dereference_shared_ptr.h GEN post_wait_free_buffer.h GEN post_wait_unpack_buffer.h GEN post_wait_work.h GEN request.h GEN standard_type.h GEN status.h GEN threads.h GEN threads_allocators.h GEN threads_none.h GEN threads_pthread.h GEN threads_tbb.h GEN centroid_partitioner.h GEN hilbert_sfc_partitioner.h GEN linear_partitioner.h GEN mapped_subdomain_partitioner.h GEN metis_csr_graph.h GEN metis_partitioner.h GEN morton_sfc_partitioner.h GEN parmetis_helper.h GEN partitioner.h GEN parmetis_partitioner.h GEN sfc_partitioner.h GEN subdomain_partitioner.h GEN diff_physics.h GEN diff_qoi.h GEN fem_physics.h GEN quadrature.h GEN quadrature_clough.h GEN quadrature_composite.h GEN quadrature_conical.h GEN quadrature_gm.h GEN quadrature_gauss.h GEN quadrature_gauss_lobatto.h GEN quadrature_grid.h GEN quadrature_jacobi.h GEN quadrature_monomial.h GEN quadrature_simpson.h GEN quadrature_trap.h GEN quadrature_nodal.h GEN rb_assembly_expansion.h GEN rb_construction.h GEN rb_construction_base.h GEN rb_data_serialization.h GEN rb_data_deserialization.h GEN rb_eim_assembly.h GEN rb_eim_construction.h GEN rb_eim_evaluation.h GEN rb_eim_theta.h GEN rb_evaluation.h GEN rb_parametrized.h GEN rb_parametrized_function.h GEN rb_parameters.h GEN rb_scm_construction.h GEN rb_theta_expansion.h GEN transient_rb_assembly_expansion.h GEN rb_temporal_discretization.h GEN rb_theta.h GEN rb_scm_evaluation.h GEN transient_rb_evaluation.h GEN transient_rb_construction.h GEN transient_rb_theta_expansion.h GEN boundary_volume_solution_transfer.h GEN direct_solution_transfer.h GEN dtk_evaluator.h GEN dtk_adapter.h GEN dtk_solution_transfer.h GEN meshfree_interpolation.h GEN meshfree_solution_transfer.h GEN meshfunction_solution_transfer.h GEN radial_basis_functions.h GEN radial_basis_interpolation.h GEN solution_transfer.h GEN adaptive_time_solver.h GEN diff_solver.h GEN eigen_solver.h GEN eigen_time_solver.h GEN eigen_sparse_linear_solver.h GEN euler2_solver.h GEN euler_solver.h GEN first_order_unsteady_solver.h GEN laspack_linear_solver.h GEN linear_solver.h GEN memory_solution_history.h GEN newmark_solver.h GEN newton_solver.h GEN nlopt_optimization_solver.h GEN no_solution_history.h GEN petsc_auto_fieldsplit.h GEN nonlinear_solver.h GEN optimization_solver.h GEN petsc_diff_solver.h GEN petsc_dm_wrapper.h GEN petsc_linear_solver.h GEN petsc_nonlinear_solver.h GEN petscdmlibmesh.h GEN second_order_unsteady_solver.h GEN slepc_eigen_solver.h GEN slepc_macro.h GEN solver_configuration.h GEN solution_history.h GEN tao_optimization_solver.h GEN time_solver.h GEN steady_solver.h GEN trilinos_nox_nonlinear_solver.h GEN twostep_time_solver.h GEN trilinos_aztec_linear_solver.h GEN condensed_eigen_system.h GEN unsteady_solver.h GEN continuation_system.h GEN dg_fem_context.h GEN diff_context.h GEN diff_system.h GEN eigen_system.h GEN elem_assembly.h GEN explicit_system.h GEN equation_systems.h GEN fem_context.h GEN fem_system.h GEN frequency_system.h GEN generic_projector.h GEN implicit_system.h GEN linear_implicit_system.h GEN newmark_system.h GEN nonlinear_implicit_system.h GEN optimization_system.h GEN parameter_accessor.h GEN parameter_multiaccessor.h GEN parameter_multipointer.h GEN qoi_set.h GEN parameter_vector.h GEN parameter_pointer.h GEN steady_system.h GEN sensitivity_data.h GEN system_norm.h GEN system.h GEN system_subset.h GEN system_subset_by_subdomain.h GEN transient_system.h GEN compare_types.h GEN error_vector.h GEN ignore_warnings.h GEN hashword.h GEN int_range.h GEN libmesh_nullptr.h GEN location_maps.h GEN null_output_iterator.h GEN mapvector.h GEN ostream_proxy.h GEN number_lookups.h GEN perf_log.h GEN parameters.h GEN perfmon.h GEN plt_loader.h GEN point_locator_base.h GEN point_locator_tree.h GEN pointer_to_pointer_iter.h GEN pool_allocator.h GEN simple_range.h GEN restore_warnings.h GEN statistics.h GEN string_to_enum.h GEN timestamp.h GEN topology_map.h GEN tree.h GEN tree_base.h GEN tree_node.h GEN utility.h GEN vectormap.h GEN xdr_cxx.h GEN parallel_communicator_specializations GEN fparser.hh GEN fparser_ad.hh GEN nanoflann.hpp GEN exodusII.h GEN netcdf.h GEN libmesh_config.h make all-am make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/include/libmesh' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/include/libmesh' make[3]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/include/libmesh' make[3]: Entering directory '/home/luoxia/projects/moose/libmesh/build/include' make[3]: Leaving directory 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'/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/libdispatch' Making all in libsrc make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/libsrc' CC libnetcdf3_la-v1hpg.lo CC libnetcdf3_la-putget.lo CC libnetcdf3_la-attr.lo CC libnetcdf3_la-nc3dispatch.lo CC libnetcdf3_la-nc3internal.lo CC libnetcdf3_la-var.lo CC libnetcdf3_la-dim.lo CC libnetcdf3_la-ncx.lo CC libnetcdf3_la-lookup3.lo CC libnetcdf3_la-ncio.lo CC libnetcdf3_la-memio.lo CC libnetcdf3_la-posixio.lo CCLD libnetcdf3.la make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/libsrc' Making all in liblib make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/liblib' CC libnetcdf_la-nc_initialize.lo CCLD libnetcdf.la make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/liblib' Making all in ncgen3 make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/ncgen3' CC main.o CC load.o CC escapes.o CC getfill.o CC init.o CC genlib.o CC ncgentab.o CCLD ncgen3 make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/ncgen3' Making all in ncgen make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/ncgen' CC generate.o CC main.o CC cdata.o CC bindata.o CC genchar.o CC cvt.o CC data.o CC genc.o CC debug.o CC escapes.o CC generr.o CC genbin.o CC genlib.o CC getfill.o CC semantics.o CC odom.o CC dump.o CC util.o CC bytebuffer.o CC list.o CC genf77.o CC f77data.o CC jdata.o CC genj.o CC nc_iter.o CC ncgeny.o CCLD ncgen make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/ncgen' Making all in ncdump make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/netcdf/v4/ncdump' Making all in cdl make[5]: Entering directory 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cbind/src/libdbg_la-ex_get_nodal_var.lo CC cbind/src/libdbg_la-ex_get_nodal_var_time.lo CC cbind/src/libdbg_la-ex_get_node_cmap.lo CC cbind/src/libdbg_la-ex_get_node_map.lo CC cbind/src/libdbg_la-ex_get_node_num_map.lo CC cbind/src/libdbg_la-ex_get_node_set.lo CC cbind/src/libdbg_la-ex_get_node_set_ids.lo CC cbind/src/libdbg_la-ex_get_ns_param_global.lo CC cbind/src/libdbg_la-ex_get_node_set_dist_fact.lo CC cbind/src/libdbg_la-ex_get_nset_var.lo CC cbind/src/libdbg_la-ex_get_node_set_param.lo CC cbind/src/libdbg_la-ex_get_nset_var_tab.lo CC cbind/src/libdbg_la-ex_get_num_map.lo CC cbind/src/libdbg_la-ex_get_object_truth_vector.lo CC cbind/src/libdbg_la-ex_get_one_attr.lo CC cbind/src/libdbg_la-ex_get_partial_elem_map.lo CC cbind/src/libdbg_la-ex_get_one_elem_attr.lo CC cbind/src/libdbg_la-ex_get_partial_num_map.lo CC cbind/src/libdbg_la-ex_get_processor_elem_maps.lo CC cbind/src/libdbg_la-ex_get_processor_node_maps.lo CC cbind/src/libdbg_la-ex_get_prop.lo CC cbind/src/libdbg_la-ex_get_prop_array.lo CC cbind/src/libdbg_la-ex_get_prop_names.lo CC cbind/src/libdbg_la-ex_get_qa.lo CC cbind/src/libdbg_la-ex_get_set.lo CC cbind/src/libdbg_la-ex_get_sets.lo CC cbind/src/libdbg_la-ex_get_set_dist_fact.lo CC cbind/src/libdbg_la-ex_get_set_param.lo CC cbind/src/libdbg_la-ex_get_side_set.lo CC cbind/src/libdbg_la-ex_get_side_set_dist_fact.lo CC cbind/src/libdbg_la-ex_get_side_set_ids.lo CC cbind/src/libdbg_la-ex_get_side_set_node_count.lo CC cbind/src/libdbg_la-ex_get_side_set_node_list.lo CC cbind/src/libdbg_la-ex_get_side_set_node_list_len.lo CC cbind/src/libdbg_la-ex_get_side_set_param.lo CC cbind/src/libdbg_la-ex_get_ss_param_global.lo CC cbind/src/libdbg_la-ex_get_sset_var.lo CC cbind/src/libdbg_la-ex_get_truth_table.lo CC cbind/src/libdbg_la-ex_get_time.lo CC cbind/src/libdbg_la-ex_get_sset_var_tab.lo CC cbind/src/libdbg_la-ex_get_var_name.lo CC cbind/src/libdbg_la-ex_get_var_names.lo CC cbind/src/libdbg_la-ex_get_var_tab.lo CC cbind/src/libdbg_la-ex_get_var_time.lo CC cbind/src/libdbg_la-ex_get_var_param.lo CC cbind/src/libdbg_la-ex_get_var.lo CC cbind/src/libdbg_la-ex_get_variable_name.lo CC cbind/src/libdbg_la-ex_get_variable_names.lo CC cbind/src/libdbg_la-ex_get_variable_param.lo CC cbind/src/libdbg_la-ex_inquire.lo CC cbind/src/libdbg_la-ex_ne_util.lo CC cbind/src/libdbg_la-ex_open.lo CC cbind/src/libdbg_la-ex_opts.lo CC cbind/src/libdbg_la-ex_put_all_var_param.lo CC cbind/src/libdbg_la-ex_put_all_var_param_ext.lo CC cbind/src/libdbg_la-ex_put_attr.lo CC cbind/src/libdbg_la-ex_put_attr_names.lo CC cbind/src/libdbg_la-ex_put_attr_param.lo CC cbind/src/libdbg_la-ex_put_block.lo CC cbind/src/libdbg_la-ex_put_block_param.lo CC cbind/src/libdbg_la-ex_put_cmap_params.lo CC cbind/src/libdbg_la-ex_put_cmap_params_cc.lo CC cbind/src/libdbg_la-ex_put_concat_all_blocks.lo CC cbind/src/libdbg_la-ex_put_concat_node_sets.lo CC cbind/src/libdbg_la-ex_put_concat_elem_block.lo CC cbind/src/libdbg_la-ex_put_concat_sets.lo CC cbind/src/libdbg_la-ex_put_concat_var_param.lo CC cbind/src/libdbg_la-ex_put_conn.lo CC cbind/src/libdbg_la-ex_put_concat_side_sets.lo CC cbind/src/libdbg_la-ex_put_coord_names.lo CC cbind/src/libdbg_la-ex_put_coord.lo CC cbind/src/libdbg_la-ex_put_coordinate_frames.lo CC cbind/src/libdbg_la-ex_put_eb_info_global.lo CC cbind/src/libdbg_la-ex_put_elem_attr.lo CC cbind/src/libdbg_la-ex_put_elem_attr_names.lo CC cbind/src/libdbg_la-ex_put_elem_block.lo CC cbind/src/libdbg_la-ex_put_elem_cmap.lo CC cbind/src/libdbg_la-ex_put_elem_conn.lo CC cbind/src/libdbg_la-ex_put_elem_map.lo CC cbind/src/libdbg_la-ex_put_elem_num_map.lo CC cbind/src/libdbg_la-ex_put_elem_var.lo CC cbind/src/libdbg_la-ex_put_elem_var_slab.lo CC cbind/src/libdbg_la-ex_put_elem_var_tab.lo CC cbind/src/libdbg_la-ex_put_entity_count_per_polyhedra.lo CC cbind/src/libdbg_la-ex_put_glob_vars.lo CC cbind/src/libdbg_la-ex_put_id_map.lo CC cbind/src/libdbg_la-ex_put_info.lo CC cbind/src/libdbg_la-ex_put_init.lo CC cbind/src/libdbg_la-ex_put_init_ext.lo CC cbind/src/libdbg_la-ex_put_init_global.lo CC cbind/src/libdbg_la-ex_put_init_info.lo CC cbind/src/libdbg_la-ex_put_loadbal_param.lo CC cbind/src/libdbg_la-ex_put_loadbal_param_cc.lo CC cbind/src/libdbg_la-ex_put_map.lo CC cbind/src/libdbg_la-ex_put_map_param.lo CC cbind/src/libdbg_la-ex_put_n_coord.lo CC cbind/src/libdbg_la-ex_put_n_elem_attr.lo CC cbind/src/libdbg_la-ex_put_n_elem_conn.lo CC cbind/src/libdbg_la-ex_put_n_elem_num_map.lo CC cbind/src/libdbg_la-ex_put_n_nodal_var.lo CC cbind/src/libdbg_la-ex_put_n_node_num_map.lo CC cbind/src/libdbg_la-ex_put_n_node_set_df.lo CC cbind/src/libdbg_la-ex_put_n_node_set.lo CC cbind/src/libdbg_la-ex_put_n_one_attr.lo CC cbind/src/libdbg_la-ex_put_n_side_set_df.lo CC cbind/src/libdbg_la-ex_put_n_side_set.lo CC cbind/src/libdbg_la-ex_put_n_var.lo CC cbind/src/libdbg_la-ex_put_name.lo CC cbind/src/libdbg_la-ex_put_names.lo CC cbind/src/libdbg_la-ex_put_nodal_var.lo CC cbind/src/libdbg_la-ex_put_node_cmap.lo CC cbind/src/libdbg_la-ex_put_nodal_var_slab.lo CC cbind/src/libdbg_la-ex_put_node_map.lo CC cbind/src/libdbg_la-ex_put_node_num_map.lo CC cbind/src/libdbg_la-ex_put_node_set_dist_fact.lo CC cbind/src/libdbg_la-ex_put_node_set.lo CC cbind/src/libdbg_la-ex_put_ns_param_global.lo CC cbind/src/libdbg_la-ex_put_nset_var.lo CC cbind/src/libdbg_la-ex_put_node_set_param.lo CC cbind/src/libdbg_la-ex_put_nset_var_tab.lo CC cbind/src/libdbg_la-ex_put_num_map.lo CC cbind/src/libdbg_la-ex_put_one_attr.lo CC cbind/src/libdbg_la-ex_put_one_elem_attr.lo CC cbind/src/libdbg_la-ex_put_partial_elem_map.lo CC cbind/src/libdbg_la-ex_put_partial_id_map.lo CC cbind/src/libdbg_la-ex_put_partial_num_map.lo CC cbind/src/libdbg_la-ex_put_partial_set_dist_fact.lo CC cbind/src/libdbg_la-ex_put_processor_elem_maps.lo CC cbind/src/libdbg_la-ex_put_prop.lo CC cbind/src/libdbg_la-ex_put_processor_node_maps.lo CC cbind/src/libdbg_la-ex_put_prop_array.lo CC cbind/src/libdbg_la-ex_put_prop_names.lo CC cbind/src/libdbg_la-ex_put_qa.lo CC cbind/src/libdbg_la-ex_put_set.lo CC cbind/src/libdbg_la-ex_put_sets.lo CC cbind/src/libdbg_la-ex_put_set_dist_fact.lo CC cbind/src/libdbg_la-ex_put_set_param.lo CC cbind/src/libdbg_la-ex_put_side_set.lo CC cbind/src/libdbg_la-ex_put_side_set_dist_fact.lo CC cbind/src/libdbg_la-ex_put_side_set_param.lo CC cbind/src/libdbg_la-ex_put_ss_param_global.lo CC cbind/src/libdbg_la-ex_put_sset_var.lo CC cbind/src/libdbg_la-ex_put_time.lo CC cbind/src/libdbg_la-ex_put_sset_var_tab.lo CC cbind/src/libdbg_la-ex_put_truth_table.lo CC cbind/src/libdbg_la-ex_put_var.lo CC cbind/src/libdbg_la-ex_put_var_name.lo CC cbind/src/libdbg_la-ex_put_var_names.lo CC cbind/src/libdbg_la-ex_put_var_tab.lo CC cbind/src/libdbg_la-ex_put_variable_names.lo CC cbind/src/libdbg_la-ex_put_var_param.lo CC cbind/src/libdbg_la-ex_put_variable_name.lo CC cbind/src/libdbg_la-ex_put_variable_param.lo CC cbind/src/libdbg_la-ex_update.lo CC cbind/src/libdbg_la-ex_utils.lo PPF77 forbind/src/libdbg_la-addrwrap.lo CC forbind/src/libdbg_la-exo_jack.lo CC cbind/src/libopt_la-ex_copy.lo CC cbind/src/libopt_la-ex_close.lo CC cbind/src/libopt_la-ex_create.lo CC cbind/src/libopt_la-ex_cvt_nodes_to_sides.lo CC cbind/src/libopt_la-ex_err.lo CC cbind/src/libopt_la-ex_conv.lo CC cbind/src/libopt_la-ex_get_all_times.lo CC cbind/src/libopt_la-ex_get_attr.lo CC cbind/src/libopt_la-ex_get_attr_names.lo CC cbind/src/libopt_la-ex_get_attr_param.lo CC cbind/src/libopt_la-ex_get_block.lo CC cbind/src/libopt_la-ex_get_block_param.lo CC cbind/src/libopt_la-ex_get_cmap_params.lo CC cbind/src/libopt_la-ex_get_concat_node_sets.lo CC cbind/src/libopt_la-ex_get_concat_sets.lo CC cbind/src/libopt_la-ex_get_concat_side_set_node_count.lo CC cbind/src/libopt_la-ex_get_concat_side_sets.lo CC cbind/src/libopt_la-ex_get_conn.lo CC cbind/src/libopt_la-ex_get_coord.lo CC cbind/src/libopt_la-ex_get_coord_names.lo CC cbind/src/libopt_la-ex_get_coordinate_frames.lo CC cbind/src/libopt_la-ex_get_eb_info_global.lo CC cbind/src/libopt_la-ex_get_elem_attr.lo CC cbind/src/libopt_la-ex_get_elem_attr_names.lo CC cbind/src/libopt_la-ex_get_elem_blk_ids.lo CC cbind/src/libopt_la-ex_get_elem_block.lo CC cbind/src/libopt_la-ex_get_elem_conn.lo CC cbind/src/libopt_la-ex_get_elem_cmap.lo CC cbind/src/libopt_la-ex_get_elem_map.lo CC cbind/src/libopt_la-ex_get_elem_num_map.lo CC cbind/src/libopt_la-ex_get_elem_var.lo CC cbind/src/libopt_la-ex_get_elem_var_tab.lo CC cbind/src/libopt_la-ex_get_elem_type.lo CC cbind/src/libopt_la-ex_get_elem_var_time.lo CC cbind/src/libopt_la-ex_get_entity_count_per_polyhedra.lo CC cbind/src/libopt_la-ex_get_glob_var_time.lo CC cbind/src/libopt_la-ex_get_glob_vars.lo CC cbind/src/libopt_la-ex_get_id_map.lo CC cbind/src/libopt_la-ex_get_info.lo CC cbind/src/libopt_la-ex_get_ids.lo CC cbind/src/libopt_la-ex_get_init.lo CC cbind/src/libopt_la-ex_get_init_ext.lo CC cbind/src/libopt_la-ex_get_init_global.lo CC cbind/src/libopt_la-ex_get_init_info.lo CC cbind/src/libopt_la-ex_get_loadbal_param.lo CC cbind/src/libopt_la-ex_get_map.lo CC cbind/src/libopt_la-ex_get_map_param.lo CC cbind/src/libopt_la-ex_get_n_conn.lo CC cbind/src/libopt_la-ex_get_n_coord.lo CC cbind/src/libopt_la-ex_get_n_elem_attr.lo CC cbind/src/libopt_la-ex_get_n_elem_conn.lo CC cbind/src/libopt_la-ex_get_n_elem_num_map.lo CC cbind/src/libopt_la-ex_get_n_elem_var.lo CC cbind/src/libopt_la-ex_get_n_nodal_var.lo CC cbind/src/libopt_la-ex_get_n_node_num_map.lo CC cbind/src/libopt_la-ex_get_n_node_set.lo CC cbind/src/libopt_la-ex_get_n_node_set_df.lo CC cbind/src/libopt_la-ex_get_n_one_attr.lo CC cbind/src/libopt_la-ex_get_n_side_set.lo CC cbind/src/libopt_la-ex_get_n_side_set_df.lo CC cbind/src/libopt_la-ex_get_n_var.lo CC cbind/src/libopt_la-ex_get_name.lo CC cbind/src/libopt_la-ex_get_names.lo CC cbind/src/libopt_la-ex_get_nodal_var.lo CC cbind/src/libopt_la-ex_get_nodal_var_time.lo CC cbind/src/libopt_la-ex_get_node_cmap.lo CC cbind/src/libopt_la-ex_get_node_map.lo CC cbind/src/libopt_la-ex_get_node_set.lo CC cbind/src/libopt_la-ex_get_node_set_dist_fact.lo CC cbind/src/libopt_la-ex_get_node_num_map.lo CC cbind/src/libopt_la-ex_get_node_set_ids.lo CC cbind/src/libopt_la-ex_get_node_set_param.lo CC cbind/src/libopt_la-ex_get_ns_param_global.lo CC cbind/src/libopt_la-ex_get_nset_var.lo CC cbind/src/libopt_la-ex_get_nset_var_tab.lo CC cbind/src/libopt_la-ex_get_num_map.lo CC cbind/src/libopt_la-ex_get_object_truth_vector.lo CC cbind/src/libopt_la-ex_get_one_elem_attr.lo CC cbind/src/libopt_la-ex_get_one_attr.lo CC cbind/src/libopt_la-ex_get_partial_elem_map.lo CC cbind/src/libopt_la-ex_get_partial_num_map.lo CC cbind/src/libopt_la-ex_get_processor_elem_maps.lo CC cbind/src/libopt_la-ex_get_processor_node_maps.lo CC cbind/src/libopt_la-ex_get_prop.lo CC cbind/src/libopt_la-ex_get_prop_array.lo CC cbind/src/libopt_la-ex_get_prop_names.lo CC cbind/src/libopt_la-ex_get_qa.lo CC cbind/src/libopt_la-ex_get_set.lo CC cbind/src/libopt_la-ex_get_sets.lo CC cbind/src/libopt_la-ex_get_set_dist_fact.lo CC cbind/src/libopt_la-ex_get_side_set.lo CC cbind/src/libopt_la-ex_get_set_param.lo CC cbind/src/libopt_la-ex_get_side_set_dist_fact.lo CC cbind/src/libopt_la-ex_get_side_set_ids.lo CC cbind/src/libopt_la-ex_get_side_set_node_count.lo CC cbind/src/libopt_la-ex_get_side_set_node_list.lo CC cbind/src/libopt_la-ex_get_side_set_node_list_len.lo CC cbind/src/libopt_la-ex_get_side_set_param.lo CC cbind/src/libopt_la-ex_get_ss_param_global.lo CC cbind/src/libopt_la-ex_get_sset_var.lo CC cbind/src/libopt_la-ex_get_sset_var_tab.lo CC cbind/src/libopt_la-ex_get_time.lo CC cbind/src/libopt_la-ex_get_truth_table.lo CC cbind/src/libopt_la-ex_get_var.lo CC cbind/src/libopt_la-ex_get_var_names.lo CC cbind/src/libopt_la-ex_get_var_name.lo CC cbind/src/libopt_la-ex_get_var_param.lo CC cbind/src/libopt_la-ex_get_var_tab.lo CC cbind/src/libopt_la-ex_get_var_time.lo CC cbind/src/libopt_la-ex_get_variable_name.lo CC cbind/src/libopt_la-ex_get_variable_names.lo CC cbind/src/libopt_la-ex_get_variable_param.lo CC cbind/src/libopt_la-ex_ne_util.lo CC cbind/src/libopt_la-ex_inquire.lo CC cbind/src/libopt_la-ex_open.lo CC cbind/src/libopt_la-ex_opts.lo CC cbind/src/libopt_la-ex_put_all_var_param.lo CC cbind/src/libopt_la-ex_put_all_var_param_ext.lo CC cbind/src/libopt_la-ex_put_attr.lo CC cbind/src/libopt_la-ex_put_attr_names.lo CC cbind/src/libopt_la-ex_put_attr_param.lo CC cbind/src/libopt_la-ex_put_block.lo CC cbind/src/libopt_la-ex_put_block_param.lo CC cbind/src/libopt_la-ex_put_cmap_params.lo CC cbind/src/libopt_la-ex_put_cmap_params_cc.lo CC cbind/src/libopt_la-ex_put_concat_all_blocks.lo CC cbind/src/libopt_la-ex_put_concat_elem_block.lo CC cbind/src/libopt_la-ex_put_concat_sets.lo CC cbind/src/libopt_la-ex_put_concat_side_sets.lo CC cbind/src/libopt_la-ex_put_concat_node_sets.lo CC cbind/src/libopt_la-ex_put_concat_var_param.lo CC cbind/src/libopt_la-ex_put_conn.lo CC cbind/src/libopt_la-ex_put_coord.lo CC cbind/src/libopt_la-ex_put_coord_names.lo CC cbind/src/libopt_la-ex_put_eb_info_global.lo CC cbind/src/libopt_la-ex_put_coordinate_frames.lo CC cbind/src/libopt_la-ex_put_elem_attr.lo CC cbind/src/libopt_la-ex_put_elem_attr_names.lo CC cbind/src/libopt_la-ex_put_elem_block.lo CC cbind/src/libopt_la-ex_put_elem_cmap.lo CC cbind/src/libopt_la-ex_put_elem_conn.lo CC cbind/src/libopt_la-ex_put_elem_map.lo CC cbind/src/libopt_la-ex_put_elem_num_map.lo CC cbind/src/libopt_la-ex_put_elem_var.lo CC cbind/src/libopt_la-ex_put_elem_var_slab.lo CC cbind/src/libopt_la-ex_put_elem_var_tab.lo CC cbind/src/libopt_la-ex_put_entity_count_per_polyhedra.lo CC cbind/src/libopt_la-ex_put_glob_vars.lo CC cbind/src/libopt_la-ex_put_id_map.lo CC cbind/src/libopt_la-ex_put_info.lo CC cbind/src/libopt_la-ex_put_init.lo CC cbind/src/libopt_la-ex_put_init_ext.lo CC cbind/src/libopt_la-ex_put_init_global.lo CC cbind/src/libopt_la-ex_put_init_info.lo CC cbind/src/libopt_la-ex_put_loadbal_param.lo CC cbind/src/libopt_la-ex_put_loadbal_param_cc.lo CC cbind/src/libopt_la-ex_put_map.lo CC cbind/src/libopt_la-ex_put_map_param.lo CC cbind/src/libopt_la-ex_put_n_coord.lo CC cbind/src/libopt_la-ex_put_n_elem_attr.lo CC cbind/src/libopt_la-ex_put_n_elem_conn.lo CC cbind/src/libopt_la-ex_put_n_elem_num_map.lo CC cbind/src/libopt_la-ex_put_n_nodal_var.lo CC cbind/src/libopt_la-ex_put_n_node_num_map.lo CC cbind/src/libopt_la-ex_put_n_node_set.lo CC cbind/src/libopt_la-ex_put_n_node_set_df.lo CC cbind/src/libopt_la-ex_put_n_one_attr.lo CC cbind/src/libopt_la-ex_put_n_side_set.lo CC cbind/src/libopt_la-ex_put_n_side_set_df.lo CC cbind/src/libopt_la-ex_put_n_var.lo CC cbind/src/libopt_la-ex_put_name.lo CC cbind/src/libopt_la-ex_put_names.lo CC cbind/src/libopt_la-ex_put_nodal_var.lo CC cbind/src/libopt_la-ex_put_nodal_var_slab.lo CC cbind/src/libopt_la-ex_put_node_map.lo CC cbind/src/libopt_la-ex_put_node_cmap.lo CC cbind/src/libopt_la-ex_put_node_num_map.lo CC cbind/src/libopt_la-ex_put_node_set.lo CC cbind/src/libopt_la-ex_put_node_set_dist_fact.lo CC cbind/src/libopt_la-ex_put_ns_param_global.lo CC cbind/src/libopt_la-ex_put_node_set_param.lo CC cbind/src/libopt_la-ex_put_nset_var.lo CC cbind/src/libopt_la-ex_put_nset_var_tab.lo CC cbind/src/libopt_la-ex_put_num_map.lo CC cbind/src/libopt_la-ex_put_one_elem_attr.lo CC cbind/src/libopt_la-ex_put_one_attr.lo CC cbind/src/libopt_la-ex_put_partial_elem_map.lo CC cbind/src/libopt_la-ex_put_partial_id_map.lo CC cbind/src/libopt_la-ex_put_partial_num_map.lo CC cbind/src/libopt_la-ex_put_partial_set_dist_fact.lo CC cbind/src/libopt_la-ex_put_processor_elem_maps.lo CC cbind/src/libopt_la-ex_put_processor_node_maps.lo CC cbind/src/libopt_la-ex_put_prop.lo CC cbind/src/libopt_la-ex_put_prop_array.lo CC cbind/src/libopt_la-ex_put_prop_names.lo CC cbind/src/libopt_la-ex_put_qa.lo CC cbind/src/libopt_la-ex_put_set.lo CC cbind/src/libopt_la-ex_put_sets.lo CC cbind/src/libopt_la-ex_put_set_dist_fact.lo CC cbind/src/libopt_la-ex_put_set_param.lo CC cbind/src/libopt_la-ex_put_side_set.lo CC cbind/src/libopt_la-ex_put_side_set_dist_fact.lo CC cbind/src/libopt_la-ex_put_side_set_param.lo CC cbind/src/libopt_la-ex_put_ss_param_global.lo CC cbind/src/libopt_la-ex_put_sset_var.lo CC cbind/src/libopt_la-ex_put_sset_var_tab.lo CC cbind/src/libopt_la-ex_put_time.lo CC cbind/src/libopt_la-ex_put_var.lo CC cbind/src/libopt_la-ex_put_truth_table.lo CC cbind/src/libopt_la-ex_put_var_name.lo CC cbind/src/libopt_la-ex_put_var_names.lo CC cbind/src/libopt_la-ex_put_var_param.lo CC cbind/src/libopt_la-ex_put_var_tab.lo CC cbind/src/libopt_la-ex_put_variable_name.lo CC cbind/src/libopt_la-ex_put_variable_names.lo CC cbind/src/libopt_la-ex_put_variable_param.lo CC cbind/src/libopt_la-ex_update.lo CC cbind/src/libopt_la-ex_utils.lo PPF77 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src/libqhullcpp/libopt_la-RboxPoints.lo CXX src/libqhullcpp/libopt_la-RoadError.lo CXX src/libqhullcpp/libopt_la-RoadLogEvent.lo CXX src/libqhullcpp/libopt_la-UsingLibQhull.lo CC src/libqhull/liboprof_la-geom.lo CC src/libqhull/liboprof_la-geom2.lo CC src/libqhull/liboprof_la-global.lo CC src/libqhull/liboprof_la-io.lo CC src/libqhull/liboprof_la-libqhull.lo CC src/libqhull/liboprof_la-mem.lo CC src/libqhull/liboprof_la-merge.lo CC src/libqhull/liboprof_la-poly.lo CC src/libqhull/liboprof_la-poly2.lo CC src/libqhull/liboprof_la-qset.lo CC src/libqhull/liboprof_la-random.lo CC src/libqhull/liboprof_la-rboxlib.lo CC src/libqhull/liboprof_la-stat.lo CC src/libqhull/liboprof_la-user.lo CC src/libqhull/liboprof_la-usermem.lo CXX src/libqhullcpp/liboprof_la-Coordinates.lo CXX src/libqhullcpp/liboprof_la-PointCoordinates.lo CXX src/libqhullcpp/liboprof_la-Qhull.lo CXX src/libqhullcpp/liboprof_la-QhullFacet.lo CXX src/libqhullcpp/liboprof_la-QhullFacetList.lo CXX src/libqhullcpp/liboprof_la-QhullFacetSet.lo CXX src/libqhullcpp/liboprof_la-QhullHyperplane.lo CXX src/libqhullcpp/liboprof_la-QhullPoint.lo CXX src/libqhullcpp/liboprof_la-QhullPoints.lo CXX src/libqhullcpp/liboprof_la-QhullPointSet.lo CXX src/libqhullcpp/liboprof_la-QhullQh.lo CXX src/libqhullcpp/liboprof_la-QhullRidge.lo CXX src/libqhullcpp/liboprof_la-QhullSet.lo CXX src/libqhullcpp/liboprof_la-QhullStat.lo CXX src/libqhullcpp/liboprof_la-QhullVertex.lo CXX src/libqhullcpp/liboprof_la-QhullVertexSet.lo CXX src/libqhullcpp/liboprof_la-RboxPoints.lo CXX src/libqhullcpp/liboprof_la-RoadError.lo CXX src/libqhullcpp/liboprof_la-RoadLogEvent.lo CXX src/libqhullcpp/liboprof_la-UsingLibQhull.lo CXXLD libdbg.la CXXLD libopt.la CXXLD liboprof.la make[2]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/qhull/qhull' Making all in libHilbert make[2]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/libHilbert' CXX src/libdbg_la-BigBitVec.lo CXX src/libdbg_la-FixBitVec.lo CXX src/libdbg_la-Hilbert.lo CXX src/libdbg_la-hilbert_mpi_ops.lo CXX src/libopt_la-BigBitVec.lo CXX src/libopt_la-FixBitVec.lo CXX src/libopt_la-Hilbert.lo CXX src/libopt_la-hilbert_mpi_ops.lo CXX src/liboprof_la-BigBitVec.lo CXX src/liboprof_la-FixBitVec.lo CXX src/liboprof_la-Hilbert.lo CXX src/liboprof_la-hilbert_mpi_ops.lo CXXLD libdbg.la CXXLD libopt.la CXXLD liboprof.la make[2]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/libHilbert' Making all in fparser make[2]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser' CXX util/bytecoderules_parser-bytecoderules_parser.o CXXLD util/bytecoderules_parser Creating system-specific Bytecode in extrasrc/fp_opcode_add.inc ... make all-recursive make[3]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser' Making all in extrasrc make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser/extrasrc' make all-am make[5]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser/extrasrc' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser/extrasrc' make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser/extrasrc' make[4]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser' CXX libdbg_la-fparser.lo CXX libdbg_la-fparser_ad.lo CXX libdbg_la-Faddeeva.lo CXX libdbg_la-fpoptimizer.lo CXX libopt_la-fparser.lo CXX libopt_la-fparser_ad.lo CXX libopt_la-Faddeeva.lo CXX liboprof_la-fparser.lo CXX libopt_la-fpoptimizer.lo CXX liboprof_la-Faddeeva.lo CXX liboprof_la-fpoptimizer.lo CXX liboprof_la-fparser_ad.lo CXX lib/libdbg_la-sha1.lo CXX lib/libopt_la-sha1.lo CXX lib/liboprof_la-sha1.lo CXXLD libdbg.la CXXLD libopt.la CXXLD liboprof.la make[4]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser' make[3]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser' make[2]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/fparser' Making all in nanoflann make[2]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/nanoflann' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/nanoflann' Making all in metaphysicl make[2]: Entering directory '/home/luoxia/projects/moose/libmesh/build/contrib/metaphysicl' make[2]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib/metaphysicl' Makefile:990: recipe for target 'all-recursive' failed make[1]: Leaving directory '/home/luoxia/projects/moose/libmesh/build/contrib' Makefile:31361: recipe for target 'all-recursive' failed

permcody commented 5 years ago

Normally you should use the mailing list for this sort of support. We use the issue system for tracking errors in the software not user environment problems.

@milljm - do you see anything wrong here?