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Multiphysics Object Oriented Simulation Environment
https://www.mooseframework.org
GNU Lesser General Public License v2.1
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Geochemistry tests modifications for new HPC system #17807

Open WilkAndy opened 3 years ago

WilkAndy commented 3 years ago

Reason

Our new HPC system causes some geochemistry tests to fail: clean these up so they pass

Design

This is the output:

test:equilibrium_models.ph_constraint: Working Directory: /scratch1/wil04q/projects/moose/modules/geochemistry/test/tests/equilibrium_models
test:equilibrium_models.ph_constraint: Running command: /scratch1/wil04q/projects/moose/modules/geochemistry/geochemistry-opt -i ph_constraint.i --error --error-unused --error-override --no-gdb-backtrace
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Framework Information:
test:equilibrium_models.ph_constraint: MOOSE Version:           git commit e900438bb7 on 2021-05-10
test:equilibrium_models.ph_constraint: LibMesh Version:         27141d18f3137f77e33cdb3d565fd38ebfbfc46f
test:equilibrium_models.ph_constraint: PETSc Version:           3.14.6
test:equilibrium_models.ph_constraint: Current Time:            Wed May 12 14:41:25 2021
test:equilibrium_models.ph_constraint: Executable Timestamp:    Wed May 12 14:40:55 2021
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Parallelism:
test:equilibrium_models.ph_constraint:   Num Processors:          1
test:equilibrium_models.ph_constraint:   Num Threads:             1
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Mesh: 
test:equilibrium_models.ph_constraint:   Parallel Type:           replicated
test:equilibrium_models.ph_constraint:   Mesh Dimension:          1
test:equilibrium_models.ph_constraint:   Spatial Dimension:       1
test:equilibrium_models.ph_constraint:   Nodes:                   
test:equilibrium_models.ph_constraint:     Total:                 2
test:equilibrium_models.ph_constraint:     Local:                 2
test:equilibrium_models.ph_constraint:   Elems:                   
test:equilibrium_models.ph_constraint:     Total:                 1
test:equilibrium_models.ph_constraint:     Local:                 1
test:equilibrium_models.ph_constraint:   Num Subdomains:          1
test:equilibrium_models.ph_constraint:   Num Partitions:          1
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Auxiliary System:
test:equilibrium_models.ph_constraint:   Num DOFs:                114
test:equilibrium_models.ph_constraint:   Num Local DOFs:          114
test:equilibrium_models.ph_constraint:   Variables:               { "solution_temperature" "kg_solvent_H2O" "activity_H2O" "bulk_moles_H2O" 
test:equilibrium_models.ph_constraint:                              "pH" ... "bulk_moles_OH-" "free_cm3_Calcite" "free_mg_Calcite" "activity_Calcite" 
test:equilibrium_models.ph_constraint:                              "bulk_moles_Calcite" } 
test:equilibrium_models.ph_constraint:   Finite Element Types:    "LAGRANGE" 
test:equilibrium_models.ph_constraint:   Approximation Orders:    "FIRST" 
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Execution Information:
test:equilibrium_models.ph_constraint:   Executioner:             Steady
test:equilibrium_models.ph_constraint:   Solver Mode:             Preconditioned JFNK
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint:  Solve Skipped!
test:equilibrium_models.ph_constraint: iter = 0 |R| = 8.42356
test:equilibrium_models.ph_constraint: iter = 1 |R| = 2.15369
test:equilibrium_models.ph_constraint: iter = 2 |R| = 0.195669
test:equilibrium_models.ph_constraint: iter = 3 |R| = 0.0308935
test:equilibrium_models.ph_constraint: iter = 4 |R| = 0.00372145
test:equilibrium_models.ph_constraint: iter = 5 |R| = 0.000427563
test:equilibrium_models.ph_constraint: iter = 6 |R| = 5.72356e-05
test:equilibrium_models.ph_constraint: iter = 7 |R| = 6.9661e-06
test:equilibrium_models.ph_constraint: iter = 8 |R| = 9.29064e-07
test:equilibrium_models.ph_constraint: iter = 9 |R| = 1.14253e-07
test:equilibrium_models.ph_constraint: iter = 10 |R| = 1.51099e-08
test:equilibrium_models.ph_constraint: iter = 11 |R| = 1.87239e-09
test:equilibrium_models.ph_constraint: iter = 12 |R| = 2.45933e-10
test:equilibrium_models.ph_constraint: iter = 13 |R| = 3.06645e-11
test:equilibrium_models.ph_constraint: iter = 14 |R| = 4.00476e-12
test:equilibrium_models.ph_constraint: iter = 15 |R| = 5.0156e-13
test:equilibrium_models.ph_constraint: iter = 16 |R| = 6.61857e-14
test:equilibrium_models.ph_constraint: Mineral Calcite supersaturated.  Swapping it with basis species HCO3-
test:equilibrium_models.ph_constraint: iter = 0 |R| = 2.12552
test:equilibrium_models.ph_constraint: iter = 1 |R| = 1.02756
test:equilibrium_models.ph_constraint: iter = 2 |R| = 0.489868
test:equilibrium_models.ph_constraint: iter = 3 |R| = 0.22401
test:equilibrium_models.ph_constraint: iter = 4 |R| = 0.0867376
test:equilibrium_models.ph_constraint: iter = 5 |R| = 0.00588255
test:equilibrium_models.ph_constraint: iter = 6 |R| = 0.000717444
test:equilibrium_models.ph_constraint: iter = 7 |R| = 6.19525e-05
test:equilibrium_models.ph_constraint: iter = 8 |R| = 5.21693e-06
test:equilibrium_models.ph_constraint: iter = 9 |R| = 4.35614e-07
test:equilibrium_models.ph_constraint: iter = 10 |R| = 3.62157e-08
test:equilibrium_models.ph_constraint: iter = 11 |R| = 3.00148e-09
test:equilibrium_models.ph_constraint: iter = 12 |R| = 2.4817e-10
test:equilibrium_models.ph_constraint: iter = 13 |R| = 2.04821e-11
test:equilibrium_models.ph_constraint: iter = 14 |R| = 1.68799e-12
test:equilibrium_models.ph_constraint: iter = 15 |R| = 1.3903e-13
test:equilibrium_models.ph_constraint: iter = 16 |R| = 1.14298e-14
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Summary:
test:equilibrium_models.ph_constraint: Total number of iterations required = 32
test:equilibrium_models.ph_constraint: Error in calculation = 1.143e-14mol
test:equilibrium_models.ph_constraint: Charge of solution = 4.163e-17mol (charge-balance species = Cl-)
test:equilibrium_models.ph_constraint: Mass of solvent water = 1kg
test:equilibrium_models.ph_constraint: Total mass = 1.101kg
test:equilibrium_models.ph_constraint: Mass of aqueous solution = 1.003kg (without free minerals)
test:equilibrium_models.ph_constraint: pH = 6
test:equilibrium_models.ph_constraint: Ionic strength = 0.06006mol/kg(solvent water)
test:equilibrium_models.ph_constraint: Stoichiometric ionic strength = 0.03374mol/kg(solvent water)
test:equilibrium_models.ph_constraint: Activity of water = 0.9988
test:equilibrium_models.ph_constraint: Temperature = 25
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Basis Species:
test:equilibrium_models.ph_constraint: Calcite;  bulk_moles = 1mol;  bulk_conc = 9.977e+04mg/kg(soln);  free_moles = 0.9783mol;  free_mass = 9.792e+04mg
test:equilibrium_models.ph_constraint: Cl-;  bulk_moles = 0.03522mol;  bulk_conc = 1245mg/kg(soln);  molality = 0.03374mol/kg(solvent water);  free_conc = 1192mg/kg(soln);  act_coeff = 0.7979;  log10(a) = -1.57
test:equilibrium_models.ph_constraint: Ca++;  bulk_moles = -5.551e-16mol;  bulk_conc = -2.218e-11mg/kg(soln);  molality = 0.01918mol/kg(solvent water);  free_conc = 766.1mg/kg(soln);  act_coeff = 0.4633;  log10(a) = -2.051
test:equilibrium_models.ph_constraint: H+;  bulk_moles = 0.03522mol;  bulk_conc = 35.39mg/kg(soln);  molality = 1.175e-06mol/kg(solvent water);  free_conc = 0.00118mg/kg(soln);  act_coeff = 0.8513;  log10(a) = -6
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Equilibrium Species:
test:equilibrium_models.ph_constraint: CO2(aq);  molality = 0.01352mol/kg(solvent water);  free_conc = 593mg/kg(soln);  act_coeff = 1;  log10(a) = -1.869;  CO2(aq) = -1*H2O - 1*Ca++ + 2*H+ + 1*Calcite;  log10K = -8.079
test:equilibrium_models.ph_constraint: HCO3-;  molality = 0.007138mol/kg(solvent water);  free_conc = 434.2mg/kg(soln);  act_coeff = 0.8144;  log10(a) = -2.236;  HCO3- = -1*Ca++ + 1*H+ + 1*Calcite;  log10K = -1.713
test:equilibrium_models.ph_constraint: CaCl+;  molality = 0.001481mol/kg(solvent water);  free_conc = 111.5mg/kg(soln);  act_coeff = 0.8092;  log10(a) = -2.921;  CaCl+ = 1*Cl- + 1*Ca++;  log10K = -0.7
test:equilibrium_models.ph_constraint: CaHCO3+;  molality = 0.001048mol/kg(solvent water);  free_conc = 105.6mg/kg(soln);  act_coeff = 0.8213;  log10(a) = -3.065;  CaHCO3+ = 1*H+ + 1*Calcite;  log10K = -2.935
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Kinetic Species:
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Minerals:
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Nernst potentials:
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: In original basis:
test:equilibrium_models.ph_constraint: H2O;  total_bulk_moles = 55.49;  transported_bulk_moles = 55.49
test:equilibrium_models.ph_constraint: Cl-;  total_bulk_moles = 0.03522;  transported_bulk_moles = 0.03522
test:equilibrium_models.ph_constraint: Ca++;  total_bulk_moles = 1;  transported_bulk_moles = 0.02171
test:equilibrium_models.ph_constraint: H+;  total_bulk_moles = -0.9648;  transported_bulk_moles = 0.01352
test:equilibrium_models.ph_constraint: HCO3-;  total_bulk_moles = 1;  transported_bulk_moles = 0.02171
test:equilibrium_models.ph_constraint: ################################################################################
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Unable to match the following literal against the program's output:
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Mass of solvent water = 1kg
test:equilibrium_models.ph_constraint: Total mass = 1.101kg
test:equilibrium_models.ph_constraint: Mass of aqueous solution = 1.003kg (without free minerals)
test:equilibrium_models.ph_constraint: pH = 6
test:equilibrium_models.ph_constraint: Ionic strength = 0.06006mol/kg(solvent water)
test:equilibrium_models.ph_constraint: Stoichiometric ionic strength = 0.03374mol/kg(solvent water)
test:equilibrium_models.ph_constraint: Activity of water = 0.9988
test:equilibrium_models.ph_constraint: Temperature = 25
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Basis Species:
test:equilibrium_models.ph_constraint: Calcite;  bulk_moles = 1mol;  bulk_conc = 9.977e+04mg/kg(soln);  free_moles = 0.9783mol;  free_mass = 9.792e+04mg
test:equilibrium_models.ph_constraint: Cl-;  bulk_moles = 0.03522mol;  bulk_conc = 1245mg/kg(soln);  molality = 0.03374mol/kg(solvent water);  free_conc = 1192mg/kg(soln);  act_coeff = 0.7979;  log10(a) = -1.57
test:equilibrium_models.ph_constraint: Ca++;  bulk_moles = -2.22e-16mol;  bulk_conc = -8.871e-12mg/kg(soln);  molality = 0.01918mol/kg(solvent water);  free_conc = 766.1mg/kg(soln);  act_coeff = 0.4633;  log10(a) = -2.051
test:equilibrium_models.ph_constraint: H+;  bulk_moles = 0.03522mol;  bulk_conc = 35.39mg/kg(soln);  molality = 1.175e-06mol/kg(solvent water);  free_conc = 0.00118mg/kg(soln);  act_coeff = 0.8513;  log10(a) = -6
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: Equilibrium Species:
test:equilibrium_models.ph_constraint: CO2(aq);  molality = 0.01352mol/kg(solvent water);  free_conc = 593mg/kg(soln);  act_coeff = 1;  log10(a) = -1.869;  CO2(aq) = -1*H2O - 1*Ca++ + 2*H+ + 1*Calcite;  log10K = -8.079
test:equilibrium_models.ph_constraint: HCO3-;  molality = 0.007138mol/kg(solvent water);  free_conc = 434.2mg/kg(soln);  act_coeff = 0.8144;  log10(a) = -2.236;  HCO3- = -1*Ca++ + 1*H+ + 1*Calcite;  log10K = -1.713
test:equilibrium_models.ph_constraint: CaCl+;  molality = 0.001481mol/kg(solvent water);  free_conc = 111.5mg/kg(soln);  act_coeff = 0.8092;  log10(a) = -2.921;  CaCl+ = 1*Cl- + 1*Ca++;  log10K = -0.7
test:equilibrium_models.ph_constraint: CaHCO3+;  molality = 0.001048mol/kg(solvent water);  free_conc = 105.6mg/kg(soln);  act_coeff = 0.8213;  log10(a) = -3.065;  CaHCO3+ = 1*H+ + 1*Calcite;  log10K = -2.935
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint: ################################################################################
test:equilibrium_models.ph_constraint: Tester failed, reason: EXPECTED OUTPUT MISSING
test:equilibrium_models.ph_constraint: 
test:equilibrium_models.ph_constraint ....................................... FAILED (EXPECTED OUTPUT MISSING)
test:equilibrium_models.seawater_no_precip: Working Directory: /scratch1/wil04q/projects/moose/modules/geochemistry/test/tests/equilibrium_models
test:equilibrium_models.seawater_no_precip: Running command: /scratch1/wil04q/projects/moose/modules/geochemistry/geochemistry-opt -i seawater_no_precip.i --error --error-unused --error-override --no-gdb-backtrace
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Framework Information:
test:equilibrium_models.seawater_no_precip: MOOSE Version:           git commit e900438bb7 on 2021-05-10
test:equilibrium_models.seawater_no_precip: LibMesh Version:         27141d18f3137f77e33cdb3d565fd38ebfbfc46f
test:equilibrium_models.seawater_no_precip: PETSc Version:           3.14.6
test:equilibrium_models.seawater_no_precip: Current Time:            Wed May 12 14:41:26 2021
test:equilibrium_models.seawater_no_precip: Executable Timestamp:    Wed May 12 14:40:55 2021
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Parallelism:
test:equilibrium_models.seawater_no_precip:   Num Processors:          1
test:equilibrium_models.seawater_no_precip:   Num Threads:             1
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Mesh: 
test:equilibrium_models.seawater_no_precip:   Parallel Type:           replicated
test:equilibrium_models.seawater_no_precip:   Mesh Dimension:          1
test:equilibrium_models.seawater_no_precip:   Spatial Dimension:       1
test:equilibrium_models.seawater_no_precip:   Nodes:                   
test:equilibrium_models.seawater_no_precip:     Total:                 2
test:equilibrium_models.seawater_no_precip:     Local:                 2
test:equilibrium_models.seawater_no_precip:   Elems:                   
test:equilibrium_models.seawater_no_precip:     Total:                 1
test:equilibrium_models.seawater_no_precip:     Local:                 1
test:equilibrium_models.seawater_no_precip:   Num Subdomains:          1
test:equilibrium_models.seawater_no_precip:   Num Partitions:          1
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Auxiliary System:
test:equilibrium_models.seawater_no_precip:   Num DOFs:                690
test:equilibrium_models.seawater_no_precip:   Num Local DOFs:          690
test:equilibrium_models.seawater_no_precip:   Variables:               { "solution_temperature" "kg_solvent_H2O" "activity_H2O" "bulk_moles_H2O" 
test:equilibrium_models.seawater_no_precip:                              "pH" ... "bulk_moles_O2(g)" "molal_CO2(g)" "mg_per_kg_CO2(g)" "activity_CO2(g)" 
test:equilibrium_models.seawater_no_precip:                              "bulk_moles_CO2(g)" } 
test:equilibrium_models.seawater_no_precip:   Finite Element Types:    "LAGRANGE" 
test:equilibrium_models.seawater_no_precip:   Approximation Orders:    "FIRST" 
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Execution Information:
test:equilibrium_models.seawater_no_precip:   Executioner:             Steady
test:equilibrium_models.seawater_no_precip:   Solver Mode:             Preconditioned JFNK
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip:  Solve Skipped!
test:equilibrium_models.seawater_no_precip: iter = 0 |R| = 0.122133
test:equilibrium_models.seawater_no_precip: iter = 1 |R| = 0.00256479
test:equilibrium_models.seawater_no_precip: iter = 2 |R| = 0.00013803
test:equilibrium_models.seawater_no_precip: iter = 3 |R| = 7.21467e-06
test:equilibrium_models.seawater_no_precip: iter = 4 |R| = 3.90436e-07
test:equilibrium_models.seawater_no_precip: iter = 5 |R| = 2.02216e-08
test:equilibrium_models.seawater_no_precip: iter = 6 |R| = 1.0775e-09
test:equilibrium_models.seawater_no_precip: iter = 7 |R| = 5.63477e-11
test:equilibrium_models.seawater_no_precip: iter = 8 |R| = 2.98326e-12
test:equilibrium_models.seawater_no_precip: iter = 9 |R| = 1.56713e-13
test:equilibrium_models.seawater_no_precip: iter = 10 |R| = 8.27516e-15
test:equilibrium_models.seawater_no_precip: iter = 11 |R| = 4.66846e-16
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Summary:
test:equilibrium_models.seawater_no_precip: Total number of iterations required = 11
test:equilibrium_models.seawater_no_precip: Error in calculation = 4.668e-16mol
test:equilibrium_models.seawater_no_precip: Charge of solution = -1.301e-17mol (charge-balance species = Cl-)
test:equilibrium_models.seawater_no_precip: Mass of solvent water = 1kg
test:equilibrium_models.seawater_no_precip: Total mass = 1.036kg
test:equilibrium_models.seawater_no_precip: Mass of aqueous solution = 1.036kg (without free minerals)
test:equilibrium_models.seawater_no_precip: pH = 8.305
test:equilibrium_models.seawater_no_precip: pe = 12.3
test:equilibrium_models.seawater_no_precip: Ionic strength = 0.6522mol/kg(solvent water)
test:equilibrium_models.seawater_no_precip: Stoichiometric ionic strength = 0.5502mol/kg(solvent water)
test:equilibrium_models.seawater_no_precip: Activity of water = 0.982
test:equilibrium_models.seawater_no_precip: Temperature = 25
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Basis Species:
test:equilibrium_models.seawater_no_precip: Cl-;  bulk_moles = 0.566mol;  bulk_conc = 1.936e+04mg/kg(soln);  molality = 0.5502mol/kg(solvent water);  free_conc = 1.882e+04mg/kg(soln);  act_coeff = 0.6276;  log10(a) = -0.4617
test:equilibrium_models.seawater_no_precip: Na+;  bulk_moles = 0.485mol;  bulk_conc = 1.076e+04mg/kg(soln);  molality = 0.4754mol/kg(solvent water);  free_conc = 1.055e+04mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -0.4958
test:equilibrium_models.seawater_no_precip: Mg++;  bulk_moles = 0.055mol;  bulk_conc = 1290mg/kg(soln);  molality = 0.03978mol/kg(solvent water);  free_conc = 933mg/kg(soln);  act_coeff = 0.316;  log10(a) = -1.901
test:equilibrium_models.seawater_no_precip: SO4--;  bulk_moles = 0.0292mol;  bulk_conc = 2707mg/kg(soln);  molality = 0.01604mol/kg(solvent water);  free_conc = 1487mg/kg(soln);  act_coeff = 0.1692;  log10(a) = -2.566
test:equilibrium_models.seawater_no_precip: K+;  bulk_moles = 0.0106mol;  bulk_conc = 399.9mg/kg(soln);  molality = 0.01035mol/kg(solvent water);  free_conc = 390.7mg/kg(soln);  act_coeff = 0.6276;  log10(a) = -2.187
test:equilibrium_models.seawater_no_precip: Ca++;  bulk_moles = 0.0106mol;  bulk_conc = 409.9mg/kg(soln);  molality = 0.005942mol/kg(solvent water);  free_conc = 229.8mg/kg(soln);  act_coeff = 0.2465;  log10(a) = -2.834
test:equilibrium_models.seawater_no_precip: HCO3-;  bulk_moles = 0.00241mol;  bulk_conc = 141.9mg/kg(soln);  molality = 0.001377mol/kg(solvent water);  free_conc = 81.1mg/kg(soln);  act_coeff = 0.6906;  log10(a) = -3.022
test:equilibrium_models.seawater_no_precip: SiO2(aq);  bulk_moles = 0.000103mol;  bulk_conc = 5.972mg/kg(soln);  molality = 8.292e-05mol/kg(solvent water);  free_conc = 4.808mg/kg(soln);  act_coeff = 1.173;  log10(a) = -4.012
test:equilibrium_models.seawater_no_precip: CO2(g);  fugacity = 0.0003162
test:equilibrium_models.seawater_no_precip: O2(g);  fugacity = 0.2
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Equilibrium Species:
test:equilibrium_models.seawater_no_precip: MgCl+;  molality = 0.009136mol/kg(solvent water);  free_conc = 526.8mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -2.212;  MgCl+ = 1*Cl- + 1*Mg++;  log10K = -0.1503
test:equilibrium_models.seawater_no_precip: NaSO4-;  molality = 0.006377mol/kg(solvent water);  free_conc = 732.5mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -2.368;  NaSO4- = 1*Na+ + 1*SO4--;  log10K = -0.6938
test:equilibrium_models.seawater_no_precip: MgSO4;  molality = 0.005763mol/kg(solvent water);  free_conc = 669.3mg/kg(soln);  act_coeff = 1;  log10(a) = -2.239;  MgSO4 = 1*SO4-- + 1*Mg++;  log10K = -2.228
test:equilibrium_models.seawater_no_precip: CaCl+;  molality = 0.003774mol/kg(solvent water);  free_conc = 275.1mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -2.596;  CaCl+ = 1*Cl- + 1*Ca++;  log10K = -0.7
test:equilibrium_models.seawater_no_precip: NaCl;  molality = 0.002774mol/kg(solvent water);  free_conc = 156.4mg/kg(soln);  act_coeff = 1;  log10(a) = -2.557;  NaCl = 1*Cl- + 1*Na+;  log10K = 1.599
test:equilibrium_models.seawater_no_precip: CaSO4;  molality = 0.0008306mol/kg(solvent water);  free_conc = 109.1mg/kg(soln);  act_coeff = 1;  log10(a) = -3.081;  CaSO4 = 1*SO4-- + 1*Ca++;  log10K = -2.32
test:equilibrium_models.seawater_no_precip: NaHCO3;  molality = 0.0004088mol/kg(solvent water);  free_conc = 33.14mg/kg(soln);  act_coeff = 1;  log10(a) = -3.388;  NaHCO3 = 1*Na+ + 1*HCO3-;  log10K = -0.129
test:equilibrium_models.seawater_no_precip: O2(aq);  molality = 0.0002151mol/kg(solvent water);  free_conc = 6.64mg/kg(soln);  act_coeff = 1.173;  log10(a) = -3.598;  O2(aq) = 1*O2(g);  log10K = 2.899
test:equilibrium_models.seawater_no_precip: KSO4-;  molality = 0.000187mol/kg(solvent water);  free_conc = 24.39mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -3.901;  KSO4- = 1*SO4-- + 1*K+;  log10K = -0.8525
test:equilibrium_models.seawater_no_precip: MgHCO3+;  molality = 0.0001822mol/kg(solvent water);  free_conc = 15mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -3.912;  MgHCO3+ = 1*Mg++ + 1*HCO3-;  log10K = -1.01
test:equilibrium_models.seawater_no_precip: MgCO3;  molality = 9.031e-05mol/kg(solvent water);  free_conc = 7.347mg/kg(soln);  act_coeff = 1;  log10(a) = -4.044;  MgCO3 = -1*H2O - 1*CO2(g) + 1*Mg++ + 2*HCO3-;  log10K = -0.3918
test:equilibrium_models.seawater_no_precip: KCl;  molality = 5.801e-05mol/kg(solvent water);  free_conc = 4.173mg/kg(soln);  act_coeff = 1;  log10(a) = -4.237;  KCl = 1*Cl- + 1*K+;  log10K = 1.588
test:equilibrium_models.seawater_no_precip: CO3--;  molality = 4.596e-05mol/kg(solvent water);  free_conc = 2.661mg/kg(soln);  act_coeff = 0.1891;  log10(a) = -5.061;  CO3-- = -1*H2O - 1*CO2(g) + 2*HCO3-;  log10K = 2.526
test:equilibrium_models.seawater_no_precip: CaHCO3+;  molality = 3.252e-05mol/kg(solvent water);  free_conc = 3.173mg/kg(soln);  act_coeff = 0.7143;  log10(a) = -4.634;  CaHCO3+ = 1*Ca++ + 1*HCO3-;  log10K = -1.222
test:equilibrium_models.seawater_no_precip: CaCO3;  molality = 2.093e-05mol/kg(solvent water);  free_conc = 2.021mg/kg(soln);  act_coeff = 1;  log10(a) = -4.679;  CaCO3 = -1*H2O - 1*CO2(g) + 1*Ca++ + 2*HCO3-;  log10K = -0.6904
test:equilibrium_models.seawater_no_precip: Mg2CO3++;  molality = 1.897e-05mol/kg(solvent water);  free_conc = 1.988mg/kg(soln);  act_coeff = 0.2087;  log10(a) = -5.402;  Mg2CO3++ = -1*H2O - 1*CO2(g) + 2*Mg++ + 2*HCO3-;  log10K = -0.9342
test:equilibrium_models.seawater_no_precip: NaH3SiO4;  molality = 1.324e-05mol/kg(solvent water);  free_conc = 1.508mg/kg(soln);  act_coeff = 1;  log10(a) = -4.878;  NaH3SiO4 = 1*H2O - 1*CO2(g) + 1*Na+ + 1*HCO3- + 1*SiO2(aq);  log10K = 0.8411
test:equilibrium_models.seawater_no_precip: NaCO3-;  molality = 1.319e-05mol/kg(solvent water);  free_conc = 1.057mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -5.052;  NaCO3- = -1*H2O - 1*CO2(g) + 1*Na+ + 2*HCO3-;  log10K = 2.021
test:equilibrium_models.seawater_no_precip: CO2(aq);  molality = 1.116e-05mol/kg(solvent water);  free_conc = 0.4738mg/kg(soln);  act_coeff = 1;  log10(a) = -4.952;  CO2(aq) = 1*CO2(g);  log10K = 1.452
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Kinetic Species:
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Minerals:
test:equilibrium_models.seawater_no_precip: Antigorite = -8.5*H2O - 48*CO2(g) + 24*Mg++ + 48*HCO3- + 17*SiO2(aq);  log10K = -133.3;  SI = 42.51
test:equilibrium_models.seawater_no_precip: Tremolite = -6*H2O - 14*CO2(g) + 5*Mg++ + 2*Ca++ + 14*HCO3- + 8*SiO2(aq);  log10K = -47.79;  SI = 7.264
test:equilibrium_models.seawater_no_precip: Talc = -2*H2O - 6*CO2(g) + 3*Mg++ + 6*HCO3- + 4*SiO2(aq);  log10K = -25.35;  SI = 6.484
test:equilibrium_models.seawater_no_precip: Chrysotile = -1*H2O - 6*CO2(g) + 3*Mg++ + 6*HCO3- + 2*SiO2(aq);  log10K = -15.36;  SI = 4.514
test:equilibrium_models.seawater_no_precip: Sepiolite = 3*H2O - 8*CO2(g) + 4*Mg++ + 8*HCO3- + 6*SiO2(aq);  log10K = -31.54;  SI = 3.673
test:equilibrium_models.seawater_no_precip: Dolomite-ord = -2*H2O - 2*CO2(g) + 1*Mg++ + 1*Ca++ + 4*HCO3-;  log10K = -13.12;  SI = 3.31
test:equilibrium_models.seawater_no_precip: Dolomite = -2*H2O - 2*CO2(g) + 1*Mg++ + 1*Ca++ + 4*HCO3-;  log10K = -13.12;  SI = 3.31
test:equilibrium_models.seawater_no_precip: Anthophyllite = -6*H2O - 14*CO2(g) + 7*Mg++ + 14*HCO3- + 8*SiO2(aq);  log10K = -41.67;  SI = 3.014
test:equilibrium_models.seawater_no_precip: Huntite = -4*H2O - 4*CO2(g) + 3*Mg++ + 1*Ca++ + 8*HCO3-;  log10K = -20.52;  SI = 1.841
test:equilibrium_models.seawater_no_precip: Dolomite-dis = -2*H2O - 2*CO2(g) + 1*Mg++ + 1*Ca++ + 4*HCO3-;  log10K = -11.57;  SI = 1.766
test:equilibrium_models.seawater_no_precip: Magnesite = -1*H2O - 1*CO2(g) + 1*Mg++ + 2*HCO3-;  log10K = -5.382;  SI = 0.9458
test:equilibrium_models.seawater_no_precip: Calcite = -1*H2O - 1*CO2(g) + 1*Ca++ + 2*HCO3-;  log10K = -6.105;  SI = 0.7357
test:equilibrium_models.seawater_no_precip: Aragonite = -1*H2O - 1*CO2(g) + 1*Ca++ + 2*HCO3-;  log10K = -5.94;  SI = 0.5708
test:equilibrium_models.seawater_no_precip: Quartz = 1*SiO2(aq);  log10K = -3.999;  SI = -0.01256
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Nernst potentials:
test:equilibrium_models.seawater_no_precip: e- = 0.5*H2O - 1*H+ - 0.25*O2(aq);  Eh = 0.7277V
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: In original basis:
test:equilibrium_models.seawater_no_precip: H2O;  total_bulk_moles = 55.5;  transported_bulk_moles = 55.5
test:equilibrium_models.seawater_no_precip: H+;  total_bulk_moles = -0.0002084;  transported_bulk_moles = -0.0002084
test:equilibrium_models.seawater_no_precip: Cl-;  total_bulk_moles = 0.566;  transported_bulk_moles = 0.566
test:equilibrium_models.seawater_no_precip: Na+;  total_bulk_moles = 0.485;  transported_bulk_moles = 0.485
test:equilibrium_models.seawater_no_precip: SO4--;  total_bulk_moles = 0.0292;  transported_bulk_moles = 0.0292
test:equilibrium_models.seawater_no_precip: Mg++;  total_bulk_moles = 0.055;  transported_bulk_moles = 0.055
test:equilibrium_models.seawater_no_precip: Ca++;  total_bulk_moles = 0.0106;  transported_bulk_moles = 0.0106
test:equilibrium_models.seawater_no_precip: K+;  total_bulk_moles = 0.0106;  transported_bulk_moles = 0.0106
test:equilibrium_models.seawater_no_precip: HCO3-;  total_bulk_moles = 0.002202;  transported_bulk_moles = 0.002202
test:equilibrium_models.seawater_no_precip: SiO2(aq);  total_bulk_moles = 0.000103;  transported_bulk_moles = 0.000103
test:equilibrium_models.seawater_no_precip: O2(aq);  total_bulk_moles = 0.0002151;  transported_bulk_moles = 0.0002151
test:equilibrium_models.seawater_no_precip: ################################################################################
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Unable to match the following literal against the program's output:
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Mass of solvent water = 1kg
test:equilibrium_models.seawater_no_precip: Total mass = 1.036kg
test:equilibrium_models.seawater_no_precip: Mass of aqueous solution = 1.036kg (without free minerals)
test:equilibrium_models.seawater_no_precip: pH = 8.305
test:equilibrium_models.seawater_no_precip: pe = 12.3
test:equilibrium_models.seawater_no_precip: Ionic strength = 0.6522mol/kg(solvent water)
test:equilibrium_models.seawater_no_precip: Stoichiometric ionic strength = 0.5502mol/kg(solvent water)
test:equilibrium_models.seawater_no_precip: Activity of water = 0.982
test:equilibrium_models.seawater_no_precip: Temperature = 25
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Basis Species:
test:equilibrium_models.seawater_no_precip: Cl-;  bulk_moles = 0.566mol;  bulk_conc = 1.936e+04mg/kg(soln);  molality = 0.5502mol/kg(solvent water);  free_conc = 1.882e+04mg/kg(soln);  act_coeff = 0.6276;  log10(a) = -0.4617
test:equilibrium_models.seawater_no_precip: Na+;  bulk_moles = 0.485mol;  bulk_conc = 1.076e+04mg/kg(soln);  molality = 0.4754mol/kg(solvent water);  free_conc = 1.055e+04mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -0.4958
test:equilibrium_models.seawater_no_precip: Mg++;  bulk_moles = 0.055mol;  bulk_conc = 1290mg/kg(soln);  molality = 0.03978mol/kg(solvent water);  free_conc = 933mg/kg(soln);  act_coeff = 0.316;  log10(a) = -1.901
test:equilibrium_models.seawater_no_precip: SO4--;  bulk_moles = 0.0292mol;  bulk_conc = 2707mg/kg(soln);  molality = 0.01604mol/kg(solvent water);  free_conc = 1487mg/kg(soln);  act_coeff = 0.1692;  log10(a) = -2.566
test:equilibrium_models.seawater_no_precip: K+;  bulk_moles = 0.0106mol;  bulk_conc = 399.9mg/kg(soln);  molality = 0.01035mol/kg(solvent water);  free_conc = 390.7mg/kg(soln);  act_coeff = 0.6276;  log10(a) = -2.187
test:equilibrium_models.seawater_no_precip: Ca++;  bulk_moles = 0.0106mol;  bulk_conc = 409.9mg/kg(soln);  molality = 0.005942mol/kg(solvent water);  free_conc = 229.8mg/kg(soln);  act_coeff = 0.2465;  log10(a) = -2.834
test:equilibrium_models.seawater_no_precip: HCO3-;  bulk_moles = 0.00241mol;  bulk_conc = 141.9mg/kg(soln);  molality = 0.001377mol/kg(solvent water);  free_conc = 81.1mg/kg(soln);  act_coeff = 0.6906;  log10(a) = -3.022
test:equilibrium_models.seawater_no_precip: SiO2(aq);  bulk_moles = 0.000103mol;  bulk_conc = 5.972mg/kg(soln);  molality = 8.292e-05mol/kg(solvent water);  free_conc = 4.808mg/kg(soln);  act_coeff = 1.173;  log10(a) = -4.012
test:equilibrium_models.seawater_no_precip: CO2(g);  fugacity = 0.0003162
test:equilibrium_models.seawater_no_precip: O2(g);  fugacity = 0.2
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Equilibrium Species:
test:equilibrium_models.seawater_no_precip: MgCl+;  molality = 0.009136mol/kg(solvent water);  free_conc = 526.8mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -2.212;  MgCl+ = 1*Cl- + 1*Mg++;  log10K = -0.1503
test:equilibrium_models.seawater_no_precip: NaSO4-;  molality = 0.006377mol/kg(solvent water);  free_conc = 732.5mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -2.368;  NaSO4- = 1*Na+ + 1*SO4--;  log10K = -0.6938
test:equilibrium_models.seawater_no_precip: MgSO4;  molality = 0.005763mol/kg(solvent water);  free_conc = 669.3mg/kg(soln);  act_coeff = 1;  log10(a) = -2.239;  MgSO4 = 1*SO4-- + 1*Mg++;  log10K = -2.228
test:equilibrium_models.seawater_no_precip: CaCl+;  molality = 0.003774mol/kg(solvent water);  free_conc = 275.1mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -2.596;  CaCl+ = 1*Cl- + 1*Ca++;  log10K = -0.7
test:equilibrium_models.seawater_no_precip: NaCl;  molality = 0.002774mol/kg(solvent water);  free_conc = 156.4mg/kg(soln);  act_coeff = 1;  log10(a) = -2.557;  NaCl = 1*Cl- + 1*Na+;  log10K = 1.599
test:equilibrium_models.seawater_no_precip: CaSO4;  molality = 0.0008306mol/kg(solvent water);  free_conc = 109.1mg/kg(soln);  act_coeff = 1;  log10(a) = -3.081;  CaSO4 = 1*SO4-- + 1*Ca++;  log10K = -2.32
test:equilibrium_models.seawater_no_precip: NaHCO3;  molality = 0.0004088mol/kg(solvent water);  free_conc = 33.14mg/kg(soln);  act_coeff = 1;  log10(a) = -3.388;  NaHCO3 = 1*Na+ + 1*HCO3-;  log10K = -0.129
test:equilibrium_models.seawater_no_precip: O2(aq);  molality = 0.0002151mol/kg(solvent water);  free_conc = 6.64mg/kg(soln);  act_coeff = 1.173;  log10(a) = -3.598;  O2(aq) = 1*O2(g);  log10K = 2.899
test:equilibrium_models.seawater_no_precip: KSO4-;  molality = 0.000187mol/kg(solvent water);  free_conc = 24.39mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -3.901;  KSO4- = 1*SO4-- + 1*K+;  log10K = -0.8525
test:equilibrium_models.seawater_no_precip: MgHCO3+;  molality = 0.0001822mol/kg(solvent water);  free_conc = 15mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -3.912;  MgHCO3+ = 1*Mg++ + 1*HCO3-;  log10K = -1.01
test:equilibrium_models.seawater_no_precip: MgCO3;  molality = 9.031e-05mol/kg(solvent water);  free_conc = 7.347mg/kg(soln);  act_coeff = 1;  log10(a) = -4.044;  MgCO3 = -1*H2O - 1*CO2(g) + 1*Mg++ + 2*HCO3-;  log10K = -0.3918
test:equilibrium_models.seawater_no_precip: KCl;  molality = 5.801e-05mol/kg(solvent water);  free_conc = 4.173mg/kg(soln);  act_coeff = 1;  log10(a) = -4.237;  KCl = 1*Cl- + 1*K+;  log10K = 1.588
test:equilibrium_models.seawater_no_precip: CO3--;  molality = 4.596e-05mol/kg(solvent water);  free_conc = 2.661mg/kg(soln);  act_coeff = 0.1891;  log10(a) = -5.061;  CO3-- = -1*H2O - 1*CO2(g) + 2*HCO3-;  log10K = 2.525
test:equilibrium_models.seawater_no_precip: CaHCO3+;  molality = 3.252e-05mol/kg(solvent water);  free_conc = 3.173mg/kg(soln);  act_coeff = 0.7143;  log10(a) = -4.634;  CaHCO3+ = 1*Ca++ + 1*HCO3-;  log10K = -1.222
test:equilibrium_models.seawater_no_precip: CaCO3;  molality = 2.093e-05mol/kg(solvent water);  free_conc = 2.021mg/kg(soln);  act_coeff = 1;  log10(a) = -4.679;  CaCO3 = -1*H2O - 1*CO2(g) + 1*Ca++ + 2*HCO3-;  log10K = -0.6904
test:equilibrium_models.seawater_no_precip: Mg2CO3++;  molality = 1.897e-05mol/kg(solvent water);  free_conc = 1.988mg/kg(soln);  act_coeff = 0.2087;  log10(a) = -5.402;  Mg2CO3++ = -1*H2O - 1*CO2(g) + 2*Mg++ + 2*HCO3-;  log10K = -0.9342
test:equilibrium_models.seawater_no_precip: NaH3SiO4;  molality = 1.324e-05mol/kg(solvent water);  free_conc = 1.508mg/kg(soln);  act_coeff = 1;  log10(a) = -4.878;  NaH3SiO4 = 1*H2O - 1*CO2(g) + 1*Na+ + 1*HCO3- + 1*SiO2(aq);  log10K = 0.8411
test:equilibrium_models.seawater_no_precip: NaCO3-;  molality = 1.319e-05mol/kg(solvent water);  free_conc = 1.057mg/kg(soln);  act_coeff = 0.6717;  log10(a) = -5.052;  NaCO3- = -1*H2O - 1*CO2(g) + 1*Na+ + 2*HCO3-;  log10K = 2.021
test:equilibrium_models.seawater_no_precip: CO2(aq);  molality = 1.116e-05mol/kg(solvent water);  free_conc = 0.4738mg/kg(soln);  act_coeff = 1;  log10(a) = -4.952;  CO2(aq) = 1*CO2(g);  log10K = 1.452
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Kinetic Species:
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Minerals:
test:equilibrium_models.seawater_no_precip: Antigorite = -8.5*H2O - 48*CO2(g) + 24*Mg++ + 48*HCO3- + 17*SiO2(aq);  log10K = -133.3;  SI = 42.51
test:equilibrium_models.seawater_no_precip: Tremolite = -6*H2O - 14*CO2(g) + 5*Mg++ + 2*Ca++ + 14*HCO3- + 8*SiO2(aq);  log10K = -47.79;  SI = 7.264
test:equilibrium_models.seawater_no_precip: Talc = -2*H2O - 6*CO2(g) + 3*Mg++ + 6*HCO3- + 4*SiO2(aq);  log10K = -25.35;  SI = 6.484
test:equilibrium_models.seawater_no_precip: Chrysotile = -1*H2O - 6*CO2(g) + 3*Mg++ + 6*HCO3- + 2*SiO2(aq);  log10K = -15.36;  SI = 4.514
test:equilibrium_models.seawater_no_precip: Sepiolite = 3*H2O - 8*CO2(g) + 4*Mg++ + 8*HCO3- + 6*SiO2(aq);  log10K = -31.54;  SI = 3.673
test:equilibrium_models.seawater_no_precip: Dolomite-ord = -2*H2O - 2*CO2(g) + 1*Mg++ + 1*Ca++ + 4*HCO3-;  log10K = -13.12;  SI = 3.31
test:equilibrium_models.seawater_no_precip: Dolomite = -2*H2O - 2*CO2(g) + 1*Mg++ + 1*Ca++ + 4*HCO3-;  log10K = -13.12;  SI = 3.31
test:equilibrium_models.seawater_no_precip: Anthophyllite = -6*H2O - 14*CO2(g) + 7*Mg++ + 14*HCO3- + 8*SiO2(aq);  log10K = -41.67;  SI = 3.014
test:equilibrium_models.seawater_no_precip: Huntite = -4*H2O - 4*CO2(g) + 3*Mg++ + 1*Ca++ + 8*HCO3-;  log10K = -20.52;  SI = 1.841
test:equilibrium_models.seawater_no_precip: Dolomite-dis = -2*H2O - 2*CO2(g) + 1*Mg++ + 1*Ca++ + 4*HCO3-;  log10K = -11.57;  SI = 1.766
test:equilibrium_models.seawater_no_precip: Magnesite = -1*H2O - 1*CO2(g) + 1*Mg++ + 2*HCO3-;  log10K = -5.382;  SI = 0.9458
test:equilibrium_models.seawater_no_precip: Calcite = -1*H2O - 1*CO2(g) + 1*Ca++ + 2*HCO3-;  log10K = -6.105;  SI = 0.7357
test:equilibrium_models.seawater_no_precip: Aragonite = -1*H2O - 1*CO2(g) + 1*Ca++ + 2*HCO3-;  log10K = -5.941;  SI = 0.5708
test:equilibrium_models.seawater_no_precip: Quartz = 1*SiO2(aq);  log10K = -3.999;  SI = -0.01256
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: Nernst potentials:
test:equilibrium_models.seawater_no_precip: e- = 0.5*H2O - 1*H+ - 0.25*O2(aq);  Eh = 0.7277V
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip: ################################################################################
test:equilibrium_models.seawater_no_precip: Tester failed, reason: EXPECTED OUTPUT MISSING
test:equilibrium_models.seawater_no_precip: 
test:equilibrium_models.seawater_no_precip .................................. FAILED (EXPECTED OUTPUT MISSING)
test:time_dependent_reactions.mixing_seawater_step2: Working Directory: /scratch1/wil04q/projects/moose/modules/geochemistry/test/tests/time_dependent_reactions
test:time_dependent_reactions.mixing_seawater_step2: Running command: /scratch1/wil04q/projects/moose/modules/geochemistry/geochemistry-opt -i mixing_seawater_step2.i --error --error-unused --error-override --no-gdb-backtrace
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Framework Information:
test:time_dependent_reactions.mixing_seawater_step2: MOOSE Version:           git commit e900438bb7 on 2021-05-10
test:time_dependent_reactions.mixing_seawater_step2: LibMesh Version:         27141d18f3137f77e33cdb3d565fd38ebfbfc46f
test:time_dependent_reactions.mixing_seawater_step2: PETSc Version:           3.14.6
test:time_dependent_reactions.mixing_seawater_step2: Current Time:            Wed May 12 14:41:40 2021
test:time_dependent_reactions.mixing_seawater_step2: Executable Timestamp:    Wed May 12 14:40:55 2021
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Parallelism:
test:time_dependent_reactions.mixing_seawater_step2:   Num Processors:          1
test:time_dependent_reactions.mixing_seawater_step2:   Num Threads:             1
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Mesh: 
test:time_dependent_reactions.mixing_seawater_step2:   Parallel Type:           replicated
test:time_dependent_reactions.mixing_seawater_step2:   Mesh Dimension:          1
test:time_dependent_reactions.mixing_seawater_step2:   Spatial Dimension:       1
test:time_dependent_reactions.mixing_seawater_step2:   Nodes:                   
test:time_dependent_reactions.mixing_seawater_step2:     Total:                 2
test:time_dependent_reactions.mixing_seawater_step2:     Local:                 2
test:time_dependent_reactions.mixing_seawater_step2:   Elems:                   
test:time_dependent_reactions.mixing_seawater_step2:     Total:                 1
test:time_dependent_reactions.mixing_seawater_step2:     Local:                 1
test:time_dependent_reactions.mixing_seawater_step2:   Num Subdomains:          1
test:time_dependent_reactions.mixing_seawater_step2:   Num Partitions:          1
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Auxiliary System:
test:time_dependent_reactions.mixing_seawater_step2:   Num DOFs:                1330
test:time_dependent_reactions.mixing_seawater_step2:   Num Local DOFs:          1330
test:time_dependent_reactions.mixing_seawater_step2:   Variables:               { "solution_temperature" "kg_solvent_H2O" "activity_H2O" "bulk_moles_H2O" 
test:time_dependent_reactions.mixing_seawater_step2:                              "pH" ... "bulk_moles_Pyrolusite" "free_cm3_Strontianite" "free_mg_Strontianite" 
test:time_dependent_reactions.mixing_seawater_step2:                              "activity_Strontianite" "bulk_moles_Strontianite" } 
test:time_dependent_reactions.mixing_seawater_step2:   Finite Element Types:    "LAGRANGE" 
test:time_dependent_reactions.mixing_seawater_step2:   Approximation Orders:    "FIRST" 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Execution Information:
test:time_dependent_reactions.mixing_seawater_step2:   Executioner:             Steady
test:time_dependent_reactions.mixing_seawater_step2:   Solver Mode:             Preconditioned JFNK
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Postprocessor Values:
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: | time           | Ca++           | Cl-            | Cu+            | H2O            | HCO3-          | K+             | Mg++           | Na+            | O2aq           | SO4--          | SiO2aq         | Zn++           | bulk_Barite    | bulk_Dolomite-ord | bulk_Muscovite | bulk_Nontronit-Na | bulk_Pyrolusite| bulk_Strontianite | free_mg_Barite | free_mg_Dolomite-ord | free_mg_Muscovite | free_mg_Nontronit-Na | free_mg_Pyrolusite | free_mg_Strontianite |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |         0.000000e+00 |      0.000000e+00 |         0.000000e+00 |       0.000000e+00 |         0.000000e+00 |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2:  Solve Skipped!
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Postprocessor Values:
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: | time           | Ca++           | Cl-            | Cu+            | H2O            | HCO3-          | K+             | Mg++           | Na+            | O2aq           | SO4--          | SiO2aq         | Zn++           | bulk_Barite    | bulk_Dolomite-ord | bulk_Muscovite | bulk_Nontronit-Na | bulk_Pyrolusite| bulk_Strontianite | free_mg_Barite | free_mg_Dolomite-ord | free_mg_Muscovite | free_mg_Nontronit-Na | free_mg_Pyrolusite | free_mg_Strontianite |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |         0.000000e+00 |      0.000000e+00 |         0.000000e+00 |       0.000000e+00 |         0.000000e+00 |
test:time_dependent_reactions.mixing_seawater_step2: |   1.000000e+00 |   1.052172e-02 |   5.588339e-01 |   7.000000e-09 |   5.549980e+01 |   2.353433e-03 |   1.010000e-02 |   5.452172e-02 |   4.800000e-01 |   1.230013e-04 |   2.949980e-02 |   1.699933e-04 |   1.000000e-08 |   2.000000e-07 |     -2.171638e-05 |   1.611659e-09 |      4.999979e-10 |   1.000004e-09 |      9.000000e-05 |   2.607177e-02 |         1.802599e+01 |      5.935685e-04 |         2.126316e-04 |       8.693123e-05 |         7.624887e+00 |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Framework Information:
test:time_dependent_reactions.mixing_seawater_step2: MOOSE Version:           git commit e900438bb7 on 2021-05-10
test:time_dependent_reactions.mixing_seawater_step2: LibMesh Version:         27141d18f3137f77e33cdb3d565fd38ebfbfc46f
test:time_dependent_reactions.mixing_seawater_step2: PETSc Version:           3.14.6
test:time_dependent_reactions.mixing_seawater_step2: Current Time:            Wed May 12 14:41:40 2021
test:time_dependent_reactions.mixing_seawater_step2: Executable Timestamp:    Wed May 12 14:40:55 2021
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Parallelism:
test:time_dependent_reactions.mixing_seawater_step2:   Num Processors:          1
test:time_dependent_reactions.mixing_seawater_step2:   Num Threads:             1
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Mesh: 
test:time_dependent_reactions.mixing_seawater_step2:   Parallel Type:           replicated
test:time_dependent_reactions.mixing_seawater_step2:   Mesh Dimension:          1
test:time_dependent_reactions.mixing_seawater_step2:   Spatial Dimension:       1
test:time_dependent_reactions.mixing_seawater_step2:   Nodes:                   
test:time_dependent_reactions.mixing_seawater_step2:     Total:                 2
test:time_dependent_reactions.mixing_seawater_step2:     Local:                 2
test:time_dependent_reactions.mixing_seawater_step2:   Elems:                   
test:time_dependent_reactions.mixing_seawater_step2:     Total:                 1
test:time_dependent_reactions.mixing_seawater_step2:     Local:                 1
test:time_dependent_reactions.mixing_seawater_step2:   Num Subdomains:          1
test:time_dependent_reactions.mixing_seawater_step2:   Num Partitions:          1
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Auxiliary System:
test:time_dependent_reactions.mixing_seawater_step2:   Num DOFs:                1330
test:time_dependent_reactions.mixing_seawater_step2:   Num Local DOFs:          1330
test:time_dependent_reactions.mixing_seawater_step2:   Variables:               { "solution_temperature" "kg_solvent_H2O" "activity_H2O" "bulk_moles_H2O" 
test:time_dependent_reactions.mixing_seawater_step2:                              "pH" ... "bulk_moles_Pyrolusite" "free_cm3_Strontianite" "free_mg_Strontianite" 
test:time_dependent_reactions.mixing_seawater_step2:                              "activity_Strontianite" "bulk_moles_Strontianite" } 
test:time_dependent_reactions.mixing_seawater_step2:   Finite Element Types:    "LAGRANGE" 
test:time_dependent_reactions.mixing_seawater_step2:   Approximation Orders:    "FIRST" 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Execution Information:
test:time_dependent_reactions.mixing_seawater_step2:   Executioner:             Steady
test:time_dependent_reactions.mixing_seawater_step2:   Solver Mode:             Preconditioned JFNK
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Postprocessor Values:
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: | time           | Ca++           | Cl-            | Cu+            | H2O            | HCO3-          | K+             | Mg++           | Na+            | O2aq           | SO4--          | SiO2aq         | Zn++           | bulk_Barite    | bulk_Dolomite-ord | bulk_Muscovite | bulk_Nontronit-Na | bulk_Pyrolusite| bulk_Strontianite | free_mg_Barite | free_mg_Dolomite-ord | free_mg_Muscovite | free_mg_Nontronit-Na | free_mg_Pyrolusite | free_mg_Strontianite |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |         0.000000e+00 |      0.000000e+00 |         0.000000e+00 |       0.000000e+00 |         0.000000e+00 |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2:  Solve Skipped!
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Postprocessor Values:
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: | time           | Ca++           | Cl-            | Cu+            | H2O            | HCO3-          | K+             | Mg++           | Na+            | O2aq           | SO4--          | SiO2aq         | Zn++           | bulk_Barite    | bulk_Dolomite-ord | bulk_Muscovite | bulk_Nontronit-Na | bulk_Pyrolusite| bulk_Strontianite | free_mg_Barite | free_mg_Dolomite-ord | free_mg_Muscovite | free_mg_Nontronit-Na | free_mg_Pyrolusite | free_mg_Strontianite |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |      0.000000e+00 |   0.000000e+00 |         0.000000e+00 |      0.000000e+00 |         0.000000e+00 |       0.000000e+00 |         0.000000e+00 |
test:time_dependent_reactions.mixing_seawater_step2: |   1.000000e+00 |   1.052172e-02 |   5.588339e-01 |   7.000000e-09 |   5.549980e+01 |   2.353433e-03 |   1.010000e-02 |   5.452172e-02 |   4.800000e-01 |   1.230013e-04 |   2.949980e-02 |   1.699933e-04 |   1.000000e-08 |   2.000000e-07 |     -2.171638e-05 |   1.611659e-09 |      4.999979e-10 |   1.000004e-09 |      9.000000e-05 |   2.607177e-02 |         1.802599e+01 |      5.935685e-04 |         2.126316e-04 |       8.693123e-05 |         7.624887e+00 |
test:time_dependent_reactions.mixing_seawater_step2: +----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+----------------+-------------------+----------------+-------------------+----------------+-------------------+----------------+----------------------+-------------------+----------------------+--------------------+----------------------+
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: Running csvdiff: /scratch1/wil04q/projects/moose/python/mooseutils/csvdiff.py /scratch1/wil04q/projects/moose/modules/geochemistry/test/tests/time_dependent_reactions/gold/mixing_seawater_step2_out.csv /scratch1/wil04q/projects/moose/modules/geochemistry/test/tests/time_dependent_reactions/mixing_seawater_step2_out.csv --relative-tolerance 5.5e-06 --abs-zero 1e-10
test:time_dependent_reactions.mixing_seawater_step2: ERROR: In file mixing_seawater_step2_out.csv: The values in column "bulk_Pyrolusite" don't match @ t1
test:time_dependent_reactions.mixing_seawater_step2:    relative diff:   1.000e-09 ~ 1.000e-09 = 1.312e-05 (1.312e-05)
test:time_dependent_reactions.mixing_seawater_step2: In file mixing_seawater_step2_out.csv: The values in column "free_mg_Pyrolusite" don't match @ t1
test:time_dependent_reactions.mixing_seawater_step2:    relative diff:   8.693e-05 ~ 8.693e-05 = 1.312e-05 (1.312e-05)
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2: ################################################################################
test:time_dependent_reactions.mixing_seawater_step2: Tester failed, reason: CSVDIFF
test:time_dependent_reactions.mixing_seawater_step2: 
test:time_dependent_reactions.mixing_seawater_step2 ......................................... FAILED (CSVDIFF)

Impact

Tests that run on a wider variety of architectures

GiudGiud commented 2 years ago

@WilkAndy are these two issues (the same one for porous flow) resolved?