Dream3d exported file can NOT be read by EBSD_reconstruction module

[zengfy-hust]

Hello Moose workers: I use dream3d to covert EBSD file to INL file .then used it as an initia condition for EBSD_reconstruction module in phase_field module .however ,when I chanege the innput file .Error message was shown as followed ERROR The following error occurred in the object "ebsd_reader", of type "EBSDReader".

EBSD Data ouside of the domain declared in the header ([-850:-730], [-0.5:119.5], [0:0]) dim=2

Stack frames: 16 0: libMesh::print_trace(std::ostream&) 1: moose::internal::mooseErrorRaw(std::cxx11::basic_string<char, std::char_traits, std::allocator >, std::cxx11::basic_string<char, std::char_traits, std::allocator >) 2: callMooseErrorRaw(std::__cxx11::basic_string<char, std::char_traits, std::allocator >&, MooseApp*) 3: EBSDReader::readFile() 4: EBSDReader::EBSDReader(InputParameters const&) 5: std::shared_ptr moose::internal::buildObj(InputParameters const&) 6: Factory::create(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, InputParameters&, unsigned int, bool) 7: FEProblemBase::addUserObject(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, InputParameters&) 8: Action::timedAct() 9: ActionWarehouse::executeActionsWithAction(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&) 10: ActionWarehouse::executeAllActions() 11: MooseApp::runInputFile() 12: MooseApp::run() 13: /home/zengfanyi/projects/moose/modules/phase_field/phase_field-opt(+0x527e) [0x55d01cade27e] 14: libc_start_main 15: /home/zengfanyi/projects/moose/modules/phase_field/phase_field-opt(+0x550d) [0x55d01cade50d] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0 [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=1 : system msg for write_line failure : Bad file descriptor EBSD_reconstruction.zip

[dschwen]

The error message indicates that one of the data points has coordinates outside the slab defined in the file's header. I'll take a look at the file. Maybe we can just discard such points and not fuss about it. I'm surprised this has not come up before, though.

[dschwen]

Looks to me like the header is not well formed. For one, the x_dim, y_dim, z_dim values should all be integers. Also x_dim * x_step + x_min should give you x_max. Please double check your export options or try changing the file manually. E.g. x_dim should be (1.5+850.5)/1.5 = 568.0.

[zengfy-hust]

thank you ,I will follow your instruction this evening ,and I will let you know if it works well .

[zengfy-hust]

Hello Moose workers 👍 A new error message occured when I change the input file and the EBSD_reconstruction file .I attached both files in this reply just for your better understand for my pronblem.The error meaasge was shown as following : ERROR A 'EBDSMeshGenerator' is not a registered object.

If you are trying to find this object in a dynamically linked library, make sure that the library can be found either in your "Problem/library_path" parameter or in the MOOSE_LIBRARY_PATH environment variable.

Stack frames: 21 0: libMesh::print_trace(std::ostream&) 1: moose::internal::mooseErrorRaw(std::cxx11::basic_string<char, std::char_traits, std::allocator >, std::cxx11::basic_string<char, std::char_traits, std::allocator >) 2: void mooseError<std::cxx11::basic_string<char, std::char_traits, std::allocator > >(std::cxx11::basic_string<char, std::char_traits, std::allocator >&&) 3: Factory::reportUnregisteredError(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&) const 4: Factory::getValidParams(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&) 5: MooseObjectAction::MooseObjectAction(InputParameters) 6: AddMeshGeneratorAction::AddMeshGeneratorAction(InputParameters) 7: /home/zengfanyi/projects/moose/framework/libmoose-opt.so.0(+0xf3a968) [0x7f80565dc968] 8: std::shared_ptr moose::internal::buildAct(InputParameters const&) 9: ActionFactory::create(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, InputParameters&) 10: Parser::walkRaw(std::cxx11::basic_string<char, std::char_traits, std::allocator >, std::cxx11::basic_string<char, std::char_traits, std::allocator >, hit::Node) 11: Parser::walk(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, std::cxx11::basic_string<char, std::char_traits, std::allocator > const&, hit::Node) 12: hit::Node::walk(hit::Walker, hit::NodeType) 13: hit::Node::walk(hit::Walker, hit::NodeType) 14: hit::Node::walk(hit::Walker*, hit::NodeType) 15: Parser::parse(std::cxx11::basic_string<char, std::char_traits, std::allocator > const&) 16: MooseApp::setupOptions() 17: MooseApp::run() 18: /home/zengfanyi/projects/moose/modules/phase_field/phase_field-opt(+0x527e) [0x564a0ef9527e] 19: libc_start_main 20: /home/zengfanyi/projects/moose/modules/phase_field/phase_field-opt(+0x550d) [0x564a0ef9550d] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0 [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=1 : system msg for write_line failure : Bad file descriptor [Uploading EBSD_reconstruction.zip…]()

[dschwen]

This is not related to the EBSD data file. You are running the input with an executable that does not have support for EBSD built in. I'm turning this into a discussion now. As this does not seem to be a MOOSE issue.