PyDMD based DMD ROMs

[alfoa]

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Pull Request Description

What issue does this change request address? (Use "#" before the issue to link it, i.e., #42.)

Closes #2343

What are the significant changes in functionality due to this change request?

Addition of pydmd library for the importing of several DMD based algorithms

Created interface with RAVEN ROMs

And automatic documentation

And associated tests

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For Change Control Board: Change Request Review

The following review must be completed by an authorized member of the Change Control Board.

• [ ] 1. Review all computer code.
• [ ] 2. If any changes occur to the input syntax, there must be an accompanying change to the user manual and xsd schema. If the input syntax change deprecates existing input files, a conversion script needs to be added (see Conversion Scripts).
• [ ] 3. Make sure the Python code and commenting standards are respected (camelBack, etc.) - See on the wiki for details.
• [ ] 4. Automated Tests should pass, including run_tests, pylint, manual building and xsd tests. If there are changes to Simulation.py or JobHandler.py the qsub tests must pass.
• [ ] 5. If significant functionality is added, there must be tests added to check this. Tests should cover all possible options. Multiple short tests are preferred over one large test. If new development on the internal JobHandler parallel system is performed, a cluster test must be added setting, in XML block, the node <internalParallel> to True.
• [ ] 6. If the change modifies or adds a requirement or a requirement based test case, the Change Control Board's Chair or designee also needs to approve the change. The requirements and the requirements test shall be in sync.
• [ ] 7. The merge request must reference an issue. If the issue is closed, the issue close checklist shall be done.
• [ ] 8. If an analytic test is changed/added is the the analytic documentation updated/added?
• [ ] 9. If any test used as a basis for documentation examples (currently found in raven/tests/framework/user_guide and raven/docs/workshop) have been changed, the associated documentation must be reviewed and assured the text matches the example.

[moosebuild]

Job Test mac on 3a2b5d8 : invalidated by @Jimmy-INL

[moosebuild]

Job Test CentOS 8 on 532124e : invalidated by @alfoa

[alfoa]

@joshua-cogliati-inl in Ubuntu PIP machine

ERROR: Could not install packages due to an OSError: [Errno 28] No space left on device

ERROR: exiting with code 1

[alfoa]

Test CentOS 8 —

@joshua-cogliati-inl Same on Test CentOS 8

[moosebuild]

Job Test CentOS 8 on 7470d51 : invalidated by @alfoa

[moosebuild]

Job Test CentOS 8 on 7470d51 : invalidated by @alfoa

[moosebuild]

Job Test CentOS 8 on 7470d51 : invalidated by @alfoa

[moosebuild]

Job Test Ubuntu 18 PIP on 7470d51 : invalidated by @alfoa

[moosebuild]

Job Mingw Test on 7470d51 : invalidated by @alfoa

[aalfonsi]

@wangcj05 @joshua-cogliati-inl @Jimmy-INL FY: if you can send feedbacks within tomorrow I can try to address them before leaving on Friday. Otherwise it will need to wait till September.

[alfoa]

I will leave today. So this MR will need to wait to September.

[moosebuild]

Job Test Ubuntu 18 PIP on 7470d51 : invalidated by @Jimmy-INL

[moosebuild]

Job Test CentOS 8 on 7470d51 : invalidated by @Jimmy-INL

[moosebuild]

Job Test Ubuntu 18 PIP on 7470d51 : invalidated by @Jimmy-INL

[moosebuild]

Job Test Ubuntu 18 PIP on 7470d51 : invalidated by @Jimmy-INL

[moosebuild]

Job Test CentOS 8 on 7470d51 : invalidated by @joshua-cogliati-inl

Cleaned up files on test machine.

[moosebuild]

Job Test Ubuntu 18 PIP on 7470d51 : invalidated by @joshua-cogliati-inl

Cleaned up files on test machine.

[moosebuild]

Job Test Ubuntu 18 PIP on 7470d51 : invalidated by @joshua-cogliati-inl

Cleaned up files on test machine.

[alfoa]

@wangcj05 @Jimmy-INL can anyone review this? I will fly back on Saturday and I would like to close this if possible.

[alfoa]

@wangcj05 @mandd addressed your comments.