User run into a problem when they have ro-crate with missing provenance information:
return CellmapsCoEmbedder(outdir=theargs.outdir,
File “/cellar/users/lvschaffer/miniconda3/envs/cellmaps_toolkit/lib/python3.8/site-packages/cellmaps_coembedding/runner.py”, line 660, in run
self._update_provenance_fields()
File “/cellar/users/lvschaffer/miniconda3/envs/cellmaps_toolkit/lib/python3.8/site-packages/cellmaps_coembedding/runner.py”, line 510, in _update_provenance_fields
prov_attrs = self._provenance_utils.get_merged_rocrate_provenance_attrs(rocrate_dirs,
File “/cellar/users/lvschaffer/miniconda3/envs/cellmaps_toolkit/lib/python3.8/site-packages/cellmaps_utils/provenance.py”, line 501, in get_merged_rocrate_provenance_attrs
new_organization_name = merged_delimiter.join(sorted(list(org_set)))
TypeError: sequence item 0: expected str instance, NoneType found
Check for none for each provenance field, skip adding None to the respective sets, log error that the information is missing and its recommended to add it (the value will be empty string) - log which ones were missing and ro-crate path that was messed up.
User run into a problem when they have ro-crate with missing provenance information:
Check for none for each provenance field, skip adding None to the respective sets, log error that the information is missing and its recommended to add it (the value will be empty string) - log which ones were missing and ro-crate path that was messed up.