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idem-lab
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conmat
Create Contact Matrices from Population Data
https://idem-lab.github.io/conmat/dev/
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Release conmat 0.2.0
#173
njtierney
opened
1 month ago
0
use quarto vignettes?
#172
njtierney
opened
1 month ago
0
Reduce time taken to render vignettes - potentially removing vignettes from CRAN build
#171
njtierney
opened
1 month ago
0
Complete CRAN checks for submission
#170
MikeLydeamore
opened
2 months ago
0
No method for `prepare_population_for_modelling` for class of `conmat_population`
#169
MikeLydeamore
opened
2 months ago
0
Prune branches for paper templates?
#168
chitrams
closed
1 month ago
3
Release conmat 0.1.0
#167
njtierney
opened
3 months ago
0
Unpack extrapolate polymod 163
#166
njtierney
opened
3 months ago
0
Working on resolving #160
#165
njtierney
closed
3 months ago
0
Add small example datasets for use in examples
#164
njtierney
opened
3 months ago
1
break down the different ways to fit models with conmat, to explain how extrapolate polymod works
#163
njtierney
opened
3 months ago
0
Update of JOSS paper
#162
chitrams
closed
1 month ago
0
Clarify contact rate / contact number / probability throughout package
#161
njtierney
opened
4 months ago
0
! no method for `age_breaks()` defined for object of class <setting_contact_model/list> yet
#160
njtierney
opened
4 months ago
2
Take a look at dwelling map info?
#159
njtierney
opened
7 months ago
0
Add NZ Household census survey
#158
njtierney
closed
7 months ago
1
Clarify `symmetric` term in `fit_single_contact_model` and co
#157
njtierney
opened
8 months ago
0
add paper template
#156
njtierney
closed
1 month ago
0
transfer repo to idem-lab
#155
njtierney
closed
4 months ago
0
add short JOSS paper template
#154
njtierney
opened
1 year ago
0
Improve work school participation 82 15
#153
njtierney
closed
1 year ago
3
Demonstrate example of using contact surveys that aren't POLYMOD
#152
njtierney
opened
1 year ago
0
Make workflow showing how to use other POLYMOD-alike contact data sources (contact surveys) with conmat
#151
njtierney
opened
1 year ago
2
Improve dim checking 127
#150
njtierney
closed
1 year ago
1
Update SIR model docs to include R0 scaling
#149
MikeLydeamore
closed
1 year ago
0
Rename abs work education 144
#148
njtierney
closed
1 year ago
0
some notes on setting matrix constructors
#147
njtierney
opened
1 year ago
0
Add SIR vignette.
#146
MikeLydeamore
closed
1 year ago
1
Functions using abs data funs renamed
#145
njtierney
closed
1 year ago
0
naming data getter functions
#144
njtierney
closed
1 year ago
0
population size not conserved with infinite age bin
#143
MikeLydeamore
opened
1 year ago
4
Passes `symmetrical` argument appropriately
#142
njtierney
closed
1 year ago
0
add `autoplot` methods for ngm, vaccination, and transmission probabi…
#141
njtierney
closed
1 year ago
0
ensure `symmetrical` parameter is passed through to all relevant modelling parts
#140
njtierney
closed
1 year ago
1
include age break information in setting matrix print methods?
#139
njtierney
closed
1 year ago
1
How to effectively compare age groups
#138
njtierney
closed
1 year ago
2
How to tidy the age breaks information
#137
njtierney
closed
1 year ago
2
Store age breaks and eigenvalue attributes
#136
njtierney
closed
1 year ago
0
Submit package to rOpenSci / JOSS
#135
njtierney
closed
1 month ago
0
Establish released vs dev site
#134
njtierney
opened
1 year ago
0
first initial commit of new transmission matrix
#132
njtierney
closed
1 year ago
1
Configure transmission probs
#131
MikeLydeamore
closed
1 year ago
0
removes tidyverse from Suggests, resolves #125
#130
njtierney
closed
1 year ago
0
Add vignette showing how to use conmat in an SIR model
#129
njtierney
closed
1 year ago
0
Store "age breaks" attribute of contact matrices
#128
njtierney
closed
1 year ago
2
Improve dimension checking in `generate_ngm`
#127
njtierney
closed
1 year ago
1
generate_ngm should gain a transmission_matrix argument
#126
njtierney
closed
1 year ago
1
remove Suggests: tidyverse
#125
njtierney
closed
1 year ago
0
initial first stages of new generate_ngm function
#124
njtierney
closed
1 year ago
2
Check functions that use ABS data have ABS in function name
#123
njtierney
closed
1 year ago
0
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