idem-lab / map-ir-pipeline

Prototype demonstration of stacked generalisation method used in https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000633#sec010
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Bring over Penny's code to use INLA space-time model as the level 1 stacker #74

Closed goldingn closed 1 week ago

goldingn commented 1 month ago

Work in progress:

goldingn commented 1 month ago

This now runs all the way through to making the final predictions, and makes multi-band prediction for multiple insecticides.

There are still various things to check and improve, and the predictions have weird vertical stripes which suggest some kind of issue with either the spatial model or the covariates.

goldingn commented 2 weeks ago

vertical stripes were due to longitude (and latitude, and other things) being included as level 0 covariates, now removed

goldingn commented 2 weeks ago

This runs through for me, and I've confirmed (by making L0 models run on only the intercept) that the spatial GP bits are running and doing something remotely sensible