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idem-lab / syncomat

Synthetically generated contact matrices for 200 countries using the R package conmat
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Run `conmat` on other contact surveys and record my workflow in a .rmd #8

Open chitrams opened 5 months ago

chitrams commented 5 months ago

Pull other contact surveys from socialmixr::list_surveys() and/or Zenodo and run these through the targets workflow to create contact matrices.

Nick suggests reverse-engineering conmat's create_polymod_model.R (link)

Document how I did this in an .rmd or .qmd

chitrams commented 5 months ago

@njtierney this is one of the questions I had, but perhaps could/should be saved for next week's chat as it's a whole issue in itself. I'm still trying to figure out how to put other contact surveys into our workflow.

njtierney commented 5 months ago

Ah yes - I need to sit down and think about this, it could be a bit more complicated than I thought, I'm not even sure what sort of format the surveys are in.

chitrams commented 4 months ago

Update to Rmd as vignettes only take .Rmds and not .qmds