Closed bmeldal-eg closed 2 years ago
Do you have an example identifier that is less than 3?
@bmeldal-eg thanks! Notice I have updated this pattern in the Bioregistry in https://github.com/biopragmatics/bioregistry/pull/367 and re-deployed the service manually (normally it updates nightly).
The corresponding page for the prefix is https://bioregistry.io/pdb-ccd and you can see these three examples are on the page and can be resolved correctly.
Hi Charlie, Thank you. I have a list of missing resources that we would like to have added. Do you prefer one ticket per resource or lump them all together? Birgit
you can do them one at a time with the new prefix request form on GitHub which gives a bit of insight into what's required/optional, or if you have everything organized in a spreadsheet or something like that you can make an issue and I'll help you through it
Excellent. If you have a template Excel sheet that goes with the prefix request form, please send it to me: birgit.meldal AT eaglegenomics.com and I will populate it.
I don't have a template right now but will develop one (issue at https://github.com/biopragmatics/bioregistry/issues/371). In the mean time, you'll need the following columns:
Optional fields:
UPDATE: Bulk contribution guidelines are here now, with a full template: https://github.com/biopragmatics/bioregistry/blob/main/docs/CONTRIBUTING.md#bulk-contribution
The new prefix is showing in bioregistry but not in identifier.org
Reading the instructions I notice it's still "ec-code" instead of "eccode" in identifiers.org as well. Why do the prefixes not get propagated?
Bioregistry imports and aligns content from Identifiers.org on a nightly basis, but there's no reverse sync. All original content in Bioregistry is CC0 licensed and we encourage reuse, but it might be the case that the Identifiers.org project has run out of steam and probably don't have the resources to do this. Would love to hear from anyone involved in it
But this is the identifiers.org GitHub repo...
Although, this is strange, there is this request page as well as a link to this GH repo I'm in right now. Hmmm.
I'll try the request page, too.
Indeed. Since the identifiers.org team has been unresponsive the last year or so, I’ve been notifying people on this issue tracker that there’s a better alternative where their issues can be more promptly fixed/addressed
Done in identifiers.org.
Hi Henning :)
Thank you for changing the RegEx.
I'm curious though, when I entered the prefix in the form it rejected the existing "pdb-ccd" and only accepted "pdb.ccd" as per bioregistry instructions.
Currently: ^\w{3}$
Expected: ^\w{1,3}$
because IDs can be anything UP TO 3 letters.
Thanks.