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idies / pyJHTDB

Python wrapper for the Johns Hopkins turbulence database library
Apache License 2.0
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fails to build a wheel on Windows 10 64 bit with Anaconda #26

Closed alexlib closed 5 years ago

alexlib commented 5 years ago

Python 3.6

 Building wheel for pyJHTDB (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: 'C:\Users\alex\Miniconda3\envs\pyjhtdb\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\alex\\AppData\\Local\\Temp\\pip-req-build-r2cwfhgv\\setup.py'"'"'; __file__='"'"'C:\\Users\\alex\\AppData\\Local\\Temp\\pip-req-build-r2cwfhgv\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\alex\AppData\Local\Temp\pip-wheel-qlkzzye1' --python-tag cp36
       cwd: C:\Users\alex\AppData\Local\Temp\pip-req-build-r2cwfhgv\
  Complete output (75 lines):
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build\lib.win-amd64-3.6
  creating build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\dbinfo.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\generic_splines.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\interpolator.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\libJHTDB.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\misc.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\MortonIndex.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\test.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\test_data.py -> build\lib.win-amd64-3.6\pyJHTDB
  copying pyJHTDB\__init__.py -> build\lib.win-amd64-3.6\pyJHTDB
  creating build\lib.win-amd64-3.6\pyJHTDB\data
  copying pyJHTDB\data\channel_xgrid.npy -> build\lib.win-amd64-3.6\pyJHTDB\data
  copying pyJHTDB\data\channel_ygrid.npy -> build\lib.win-amd64-3.6\pyJHTDB\data
  copying pyJHTDB\data\channel_zgrid.npy -> build\lib.win-amd64-3.6\pyJHTDB\data
  copying pyJHTDB\data\channel5200_ygrid.npy -> build\lib.win-amd64-3.6\pyJHTDB\data
  copying pyJHTDB\data\transition_bl_ygrid.npy -> build\lib.win-amd64-3.6\pyJHTDB\data
  running build_ext
  building 'libJHTDB' extension
  creating build\temp.win-amd64-3.6
  creating build\temp.win-amd64-3.6\Release
  creating build\temp.win-amd64-3.6\Release\C
  creating build\temp.win-amd64-3.6\Release\turblib
  C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iturblib -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include "-IC:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" /TcC/local_tools.c /Fobuild\temp.win-amd64-3.6\Release\C/local_tools.obj
  local_tools.c
  C/local_tools.c(35): warning C4305: 'initializing': truncation from 'double' to 'float'
  C/local_tools.c(66): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(78): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(82): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(83): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(84): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(140): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(151): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(155): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(156): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(157): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(203): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(214): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(218): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(219): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(220): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(223): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(184): warning C4101: 'valtmp': unreferenced local variable
  C/local_tools.c(184): warning C4101: 'ztmp': unreferenced local variable
  C/local_tools.c(184): warning C4101: 'xtmp': unreferenced local variable
  C/local_tools.c(184): warning C4101: 'ytmp': unreferenced local variable
  C/local_tools.c(184): warning C4101: 'rad0': unreferenced local variable
  C/local_tools.c(184): warning C4101: 'stmp': unreferenced local variable
  C/local_tools.c(306): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(313): warning C4244: '=': conversion from 'double' to 'float', possible loss of data
  C/local_tools.c(289): warning C4101: 'valtmp': unreferenced local variable
  C/local_tools.c(289): warning C4101: 'ztmp': unreferenced local variable
  C/local_tools.c(289): warning C4101: 'xtmp': unreferenced local variable
  C/local_tools.c(289): warning C4101: 'ytmp': unreferenced local variable
  C/local_tools.c(289): warning C4101: 'stmp': unreferenced local variable
  C/local_tools.c(289): warning C4101: 'bsize': unreferenced local variable
  C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iturblib -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include "-IC:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" /Tcturblib/turblib.c /Fobuild\temp.win-amd64-3.6\Release\turblib/turblib.obj
  turblib.c
  turblib/turblib.c(86): warning C4996: 'strncpy': This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.
  C:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt\string.h(337): note: see declaration of 'strncpy'
  turblib/turblib.c(411): warning C4013: 'bzero' undefined; assuming extern returning int
  C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iturblib -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include "-IC:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" /Tcturblib/soapC.c /Fobuild\temp.win-amd64-3.6\Release\turblib/soapC.obj
  soapC.c
  C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iturblib -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include "-IC:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" /Tcturblib/soapClient.c /Fobuild\temp.win-amd64-3.6\Release\turblib/soapClient.obj
  soapClient.c
  C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Iturblib -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include -IC:\Users\alex\Miniconda3\envs\pyjhtdb\include "-IC:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.16299.0\cppwinrt" /Tcturblib/stdsoap2.c /Fobuild\temp.win-amd64-3.6\Release\turblib/stdsoap2.obj
  stdsoap2.c
  C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\bin\HostX86\x64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\Users\alex\Miniconda3\envs\pyjhtdb\libs /LIBPATH:C:\Users\alex\Miniconda3\envs\pyjhtdb\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio\2017\BuildTools\VC\Tools\MSVC\14.15.26726\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.16299.0\um\x64" /EXPORT:PyInit_libJHTDB build\temp.win-amd64-3.6\Release\C/local_tools.obj build\temp.win-amd64-3.6\Release\turblib/turblib.obj build\temp.win-amd64-3.6\Release\turblib/soapC.obj build\temp.win-amd64-3.6\Release\turblib/soapClient.obj build\temp.win-amd64-3.6\Release\turblib/stdsoap2.obj /OUT:build\lib.win-amd64-3.6\libJHTDB.cp36-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.6\Release\C\libJHTDB.cp36-win_amd64.lib
  LINK : error LNK2001: unresolved external symbol PyInit_libJHTDB
  build\temp.win-amd64-3.6\Release\C\libJHTDB.cp36-win_amd64.lib : fatal error LNK1120: 1 unresolved externals
  error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2017\\BuildTools\\VC\\Tools\\MSVC\\14.15.26726\\bin\\HostX86\\x64\\link.exe' failed with exit status 1120
  ----------------------------------------
  ERROR: Failed building wheel for pyJHTDB
zzwz02 commented 5 years ago

Hi alexlib. Would you mind trying Installing from source?

git clone https://github.com/idies/pyJHTDB.git
cd pyJHTDB
python update_turblib.py
pip install --upgrade ./
alexlib commented 5 years ago

Same result unfortunately.

On Thu, Oct 3, 2019, 20:52 Zhao Wu notifications@github.com wrote:

Hi alexlib. Would you mind trying Installing from source?

git clone https://github.com/idies/pyJHTDB.git cd pyJHTDB python update_turblib.py pip install --upgrade ./

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/idies/pyJHTDB/issues/26?email_source=notifications&email_token=AAFWMZWCQXVR376R6ICIIZLQMYWPVA5CNFSM4I5AGSEKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEAJA6TY#issuecomment-538054479, or mute the thread https://github.com/notifications/unsubscribe-auth/AAFWMZQQQJTOUCQQ3NR4M7LQMYWPVANCNFSM4I5AGSEA .

alexlib commented 5 years ago

If you have a binary wheel for Windows, maybe you can upload it to pypi to save your users the compilation.

On Thu, Oct 3, 2019, 20:52 Zhao Wu notifications@github.com wrote:

Hi alexlib. Would you mind trying Installing from source?

git clone https://github.com/idies/pyJHTDB.git cd pyJHTDB python update_turblib.py pip install --upgrade ./

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/idies/pyJHTDB/issues/26?email_source=notifications&email_token=AAFWMZWCQXVR376R6ICIIZLQMYWPVA5CNFSM4I5AGSEKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEAJA6TY#issuecomment-538054479, or mute the thread https://github.com/notifications/unsubscribe-auth/AAFWMZQQQJTOUCQQ3NR4M7LQMYWPVANCNFSM4I5AGSEA .

zzwz02 commented 5 years ago

Hi. I find a solution. git clone https://github.com/idies/pyJHTDB.git cd pyJHTDB python setup.py install You will then see the errors. Then copy the file turblib.obj to current pyJHTDB folder and repeat the installation copy build\temp.win-****\Release\turblib\turblib.obj %CD% python setup.py install turblib.obj can also be used in the turblib library in which you also opened a ticket.