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idies / pyJHTDB

Python wrapper for the Johns Hopkins turbulence database library
Apache License 2.0
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Cannot build from source #9

Closed petebachant closed 9 years ago

petebachant commented 9 years ago

Attempting to run python setup.py install gives

$ python setup.py install
running install
/home/pete/anaconda3/lib/python3.4/site-packages/setuptools-14.3-py3.4.egg/pkg_resources/__init__.py:2512: PEP440Warning: 'llvmlite (0.2.2-1-gbcb15be)' is being parsed as a legacy, non PEP 440, version. You may find odd behavior and sort order. In particular it will be sorted as less than 0.0. It is recommend to migrate to PEP 440 compatible versions.
running bdist_egg
running egg_info
writing pyJHTDB.egg-info/PKG-INFO
writing requirements to pyJHTDB.egg-info/requires.txt
writing top-level names to pyJHTDB.egg-info/top_level.txt
writing dependency_links to pyJHTDB.egg-info/dependency_links.txt
reading manifest file 'pyJHTDB.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'turblib/turblib.c'
warning: no files found matching 'turblib/soapC.c'
warning: no files found matching 'turblib/soapClient.c'
warning: no files found matching 'turblib/stdsoap2.c'
warning: no files found matching 'turblib/*.h'
warning: no files found matching 'turblib/*.nsmap'
writing manifest file 'pyJHTDB.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
running build_ext
building 'libJHTDB' extension
creating build/temp.linux-x86_64-3.4
creating build/temp.linux-x86_64-3.4/C
creating build/temp.linux-x86_64-3.4/turblib
gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DCUTOUT_SUPPORT=1 -Iturblib -I/home/pete/anaconda3/include/python3.4m -c C/local_tools.c -o build/temp.linux-x86_64-3.4/C/local_tools.o
C/local_tools.c:38:21: fatal error: turblib.h: No such file or directory
 #include <turblib.h>
                     ^
compilation terminated.
error: command 'gcc' failed with exit status 1

I am on Linux Mint using Python 3.4 installed with Anaconda. Installing via pip works fine.

chichilalescu commented 9 years ago

Hi Pete,

Please try the following:

python update_turblib.py python setup.py install

If it works, I'll just need to update the README.rst...

Best, Chichi L

On 03/18/2015 12:44 PM, Pete Bachant wrote:

Attempting to run |python setup.py install| gives

$ python setup.py install running install /home/pete/anaconda3/lib/python3.4/site-packages/setuptools-14.3-py3.4.egg/pkg_resources/init.py:2512: PEP440Warning:'llvmlite (0.2.2-1-gbcb15be)' is being parsed as a legacy, non PEP 440, version. You may find odd behavior and sort order. In particular it will be sorted as less than 0.0. It is recommend to migrate to PEP 440 compatible versions. running bdist_egg running egg_info writing pyJHTDB.egg-info/PKG-INFO writing requirements to pyJHTDB.egg-info/requires.txt writing top-level names to pyJHTDB.egg-info/top_level.txt writing dependency_links to pyJHTDB.egg-info/dependencylinks.txt reading manifest file'pyJHTDB.egg-info/SOURCES.txt' reading manifest template'MANIFEST.in' warning: no files found matching'turblib/turblib.c' warning: no files found matching'turblib/soapC.c' warning: no files found matching'turblib/soapClient.c' warning: no files found matching'turblib/stdsoap2.c' warning: no files found matching'turblib/.h' warning: no files found matching'turblib/_.nsmap' writing manifest file'pyJHTDB.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py running build_ext building'libJHTDB' extension creating build/temp.linux-x86_64-3.4 creating build/temp.linux-x86_64-3.4/C creating build/temp.linux-x86_64-3.4/turblib gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DCUTOUT_SUPPORT=1 -Iturblib -I/home/pete/anaconda3/include/python3.4m -c C/local_tools.c -o build/temp.linux-x86_64-3.4/C/local_tools.o C/local_tools.c:38:21: fatal error: turblib.h: No such file or directory

include 

                  ^

compilation terminated. error:command 'gcc' failed withexit status 1

I am on Linux Mint using Python 3.4 installed with Anaconda. Installing via pip works fine.

— Reply to this email directly or view it on GitHub https://github.com/idies/pyJHTDB/issues/9.

Cristian Constantin Lalescu Postdoctoral Researcher Department of Applied Mathematics & Statistics 3400 North Charles Street The Johns Hopkins University Baltimore, Maryland 21218-2682 USA

petebachant commented 9 years ago

That seems to have worked!