The original zip files and some other files that are not being used have been moved to the BAK directory to unclutter the root.
Most of those zip files are represented in some form in the test data within the /test/ directory.
As previously discussed, I targeted python 2 with this, I used 2.7
That being said, only 1 of the 35 tests fails with Python3.8. I'm going to investigate that early next week, because i'm curious/concerned as to why that fails with Python 3.
$ python3.8 -m pytest test/test_cafa4_checker.py::test_go_and_do_zip_file -vs
=============================================================================================== test session starts ===============================================================================================
platform linux -- Python 3.8.1, pytest-5.3.2, py-1.8.1, pluggy-0.13.1 -- /usr/bin/python3.8
cachedir: .pytest_cache
rootdir: /home/szarecor/venvs/cafa-format-check/code/cafa-format-check
collected 1 item
test/test_cafa4_checker.py::test_go_and_do_zip_file
OUTPUT:
TESTING /home/szarecor/venvs/cafa-format-check/code/cafa-format-check/test/test_data/end_to_end_data/valid/ateam_.zip
VALIDATION FAILED
Error in TC_ateam_1_9606_go.txt, line 1, GO prediction: wrong number of fields. Should be 3
FAILED
Tests can be run with pytest, (which can be installed with pip).
I believe this code is ready to go.
The original zip files and some other files that are not being used have been moved to the BAK directory to unclutter the root.
Most of those zip files are represented in some form in the test data within the /test/ directory.
As previously discussed, I targeted python 2 with this, I used 2.7
That being said, only 1 of the 35 tests fails with Python3.8. I'm going to investigate that early next week, because i'm curious/concerned as to why that fails with Python 3.
Tests can be run with pytest, (which can be installed with pip).
From the repo root run:
python -m pytestLet my know if you have questions, concerns, etc.