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idolawoye / BAGEP

A pipeline for Bacterial Whole genome sequence data analysis
MIT License
13 stars 2 forks source link

no argument **-bb** in iqtree --help #4

Closed splaisan closed 3 years ago

splaisan commented 3 years ago

the iqtree command reads:

# Building phylogeny
rule tree:
  input:
    "core.aln"
  output:
    "iqtree.log"
  message:
    "Builing phylogeny tree of whole genomes using IQ-Tree"
  shell:
    "iqtree -s results/{input} -bb 1000 > {output}"

could it be that it should be instead -b 1000 ?

splaisan commented 3 years ago

sorry! found that -bb is the new shorthand for --ufboot, replacing -B