Dev

[phlaster]

• tests (testthat) for some functions from utils/utils.R:
  • readFastaMy, writeFastaMy, seq2int, nt2seq, splitSeq, aln2mx, mx2aln, mx2seq
• plotGenomeSynteny upd (pangen_pre::6-th step):
  • parallel execution
  • fasta files recognition (all fasta suffixes excluding compressed)
• README update:
  • Added OS-specific environment activation instructions
  • Added README to tests directory
• style updates here and there, rmd updates