Open ghost opened 7 years ago
ghost
commented
7 years ago After changing 1106 and 1107 to remove Pool use and trying one 'alphabet' at a time I get the same error as previously reported :KeyError: return float(self._raw_data['POINTERS'][index]) KeyError: 'POINTERS'
zachmueller
commented
6 years ago @bioinformatics-deakin did you ever figure out how to resolve this? I'm running into a similar issue trying to get the code to work. I'm unfamiliar with where the DCN.prmtop file even comes from--do you have a clue where we are supposed to get that? Or does the file get created on the fly while processing the .pdb file?
ghost
commented
6 years ago Hi,
the file is an Amber Tools File. I never got MAWS to work and I think as it is, it never will. I contacted the developers but I got no reply.
Sorry can't be more help.
Theo
From: Zach Mueller [notifications@github.com] Sent: Sunday, 21 January 2018 12:40 PM To: igemsoftware/Heidelberg_15 Cc: bioinformatics; Mention Subject: Re: [igemsoftware/Heidelberg_15] DCN.prmtop missing (#3)
@bioinformatics-deakinhttps://github.com/bioinformatics-deakin did you ever figure out how to resolve this? I'm running into a similar issue trying to get the code to work. I'm unfamiliar with where the DCN.prmtop file even comes from--do you have a clue where we are supposed to get that? Or does the file get created on the fly while processing the .pdb file?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/igemsoftware/Heidelberg_15/issues/3#issuecomment-359216709, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ATvGWUtyz5bQG7PG0sGtnHA-AZknat0qks5tMpVxgaJpZM4O0KJx.
Important Notice: The contents of this email are intended solely for the named addressee and are confidential; any unauthorised use, reproduction or storage of the contents is expressly prohibited. If you have received this email in error, please delete it and any attachments immediately and advise the sender by return email or telephone.
Deakin University does not warrant that this email and any attachments are error or virus free.
Abhigna18
commented
4 years ago Hii did anyone resolve this even I am getting the same error. please help Thank you
MAWS.py ./ IL6_edited.pdb ['DGN', 'DAN', 'DTN', 'DCN'] Choosing from candidates ... Constructing Ligand/Aptamer complex ... Constructing Ligand/Aptamer complex ... Constructing Ligand/Aptamer complex ... Constructing Ligand/Aptamer complex ... Aptamer/Ligand complex constructed. Loading Aptamer/Ligand complex ... Aptamer/Ligand complex constructed. Loading Aptamer/Ligand complex ... Aptamer/Ligand complex constructed. Loading Aptamer/Ligand complex ... Traceback (most recent call last): File "/home/theoa/qiime-env/env/bin/MAWS.py", line 1212, in
Aptamer/Ligand complex constructed.
Loading Aptamer/Ligand complex ...
positions_and_Ntides = loop()
File "/home/theoa/qiime-env/env/bin/MAWS.py", line 1105, in loop
pos_Nt_S_task = pool.map(initial,alphabet)
File "/usr/lib64/python2.7/multiprocessing/pool.py", line 250, in map
return self.map_async(func, iterable, chunksize).get()
File "/usr/lib64/python2.7/multiprocessing/pool.py", line 554, in get
raise self._value
IOError: [Errno 2] No such file or directory: 'DCN.prmtop'