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ignaciorlando / fundus-vessel-segmentation-tbme

In this work, we present an extensive description and evaluation of our method for blood vessel segmentation in fundus images based on a discriminatively trained, fully connected conditional random field model. Standard segmentation priors such as a Potts model or total variation usually fail when dealing with thin and elongated structures. We overcome this difficulty by using a conditional random field model with more expressive potentials, taking advantage of recent results enabling inference of fully connected models almost in real-time. Parameters of the method are learned automatically using a structured output support vector machine, a supervised technique widely used for structured prediction in a number of machine learning applications. Our method, trained with state of the art features, is evaluated both quantitatively and qualitatively on four publicly available data sets: DRIVE, STARE, CHASEDB1 and HRF. Additionally, a quantitative comparison with respect to other strategies is included. The experimental results show that this approach outperforms other techniques when evaluated in terms of sensitivity, F1-score, G-mean and Matthews correlation coefficient. Additionally, it was observed that the fully connected model is able to better distinguish the desired structures than the local neighborhood based approach. Results suggest that this method is suitable for the task of segmenting elongated structures, a feature that can be exploited to contribute with other medical and biological applications.
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vessel scale #13

Open ruiruian opened 3 years ago

ruiruian commented 3 years ago

Hi，

sorry to bother you, I want to apply this great work on my data, the vessel scale of my data is larger than funds vessel, which parameter controls the scale?

Thank you!

Best wishes!

zyx3216825 commented 3 years ago

Hi ruiruian Did you download asoca data, I can't download that data now

ruiruian commented 3 years ago

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

zyx3216825 commented 3 years ago

无奈，想要这份数据，你还知道谁下载过吗，我想直接管下载过的肉要一份

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:07 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

ruiruian commented 3 years ago

不清楚呢，我也想要这份数据，等了半年了，放弃了，一般数据不允许外传，应该问其他人也不好要。

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

无奈，想要这份数据，你还知道谁下载过吗，我想直接管下载过的肉要一份

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:07 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

zyx3216825 commented 3 years ago

你都等半年了啊，可我看leaderboard还持续更新呢

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:13 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

不清楚呢，我也想要这份数据，等了半年了，放弃了，一般数据不允许外传，应该问其他人也不好要。

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

无奈，想要这份数据，你还知道谁下载过吗，我想直接管下载过的肉要一份

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:07 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

ruiruian commented 3 years ago

我发了好几次邮件，都没有回信

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

你都等半年了啊，可我看leaderboard还持续更新呢

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:13 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

不清楚呢，我也想要这份数据，等了半年了，放弃了，一般数据不允许外传，应该问其他人也不好要。

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

无奈，想要这份数据，你还知道谁下载过吗，我想直接管下载过的肉要一份

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:07 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

zyx3216825 commented 3 years ago

你添那个表格了吧，我看表格后边还有什么witness签名盖章啥的

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:17 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

我发了好几次邮件，都没有回信

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

你都等半年了啊，可我看leaderboard还持续更新呢

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:13 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

不清楚呢，我也想要这份数据，等了半年了，放弃了，一般数据不允许外传，应该问其他人也不好要。

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

无奈，想要这份数据，你还知道谁下载过吗，我想直接管下载过的肉要一份

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:07 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

ruiruian commented 3 years ago

嗯嗯，添了

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

你添那个表格了吧，我看表格后边还有什么witness签名盖章啥的

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:17 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

我发了好几次邮件，都没有回信

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

你都等半年了啊，可我看leaderboard还持续更新呢

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:13 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

不清楚呢，我也想要这份数据，等了半年了，放弃了，一般数据不允许外传，应该问其他人也不好要。

安芮芮

@. | 签名由网易邮箱大师定制 On 5/4/2021 @.> wrote：

无奈，想要这份数据，你还知道谁下载过吗，我想直接管下载过的肉要一份

发自我的iPhone

------------------ Original ------------------ From: ruiruian @.> Date: Tue,May 4,2021 5:07 PM To: ignaciorlando/fundus-vessel-segmentation-tbme @.> Cc: zyx3216825 @.>, Comment @.> Subject: Re: [ignaciorlando/fundus-vessel-segmentation-tbme] vessel scale (#13)

Hi， I have applied for a long time, but still can't download.

安芮芮

@. | 签名由网易邮箱大师定制 On 5/2/2021 @.> wrote：

Hi ruiruian Did you download asoca data, I can't download that data now

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.