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igordot / msigdbr

MSigDB gene sets for multiple organisms in a tidy data format
https://igordot.github.io/msigdbr
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Archived genesets #7

Closed millerh1 closed 5 years ago

millerh1 commented 5 years ago

Hello!

Is there any way msigdbr could be used to access archived genesets? i.e. those belonging to the "ARCHIVED" collection such as PENG_GLUTAMINE_DEPRIVATION_DN

Best, Henry

igordot commented 5 years ago

That is not currently possible (as you probably already discovered).

I am not sure how hard it would be to add. I don't think the archived gene sets are easily accessible. For example, it's possible to download older releases of MSigDB, but the archived ones are not explicitly labeled there. You could check which gene sets disappear, but that would not account for gene sets that were modified.

millerh1 commented 5 years ago

Understood! Thanks!

Best, Henry