search

igraph / python-igraph

Python interface for igraph
GNU General Public License v2.0
1.3k stars 249 forks source link

Could not build and install python-igraph on OSX 10.15 #275

Closed vishalmhjn closed 4 years ago

vishalmhjn commented 4 years ago

brew install cairo brew install py2cairo brew install igraph

I get the following error when running sudo pip install python-igraph

`ERROR: Command errored out with exit status 1: command: /Users/home/opendata/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-install-fg3snf7r/python-igraph/setup.py'"'"'; file='"'"'/private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-install-fg3snf7r/python-igraph/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-record-obx9enfc/install-record.txt --single-version-externally-managed --compile --install-headers /Users/home/opendata/bin/../include/site/python3.7/python-igraph cwd: /private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-install-fg3snf7r/python-igraph/ Complete output (156 lines): running install running build running build_py creating build creating build/lib.macosx-10.15-x86_64-3.7 creating build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/configuration.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/clustering.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/compat.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/formula.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/layout.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/cut.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/init.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/matching.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/summary.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/datatypes.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/utils.py -> build/lib.macosx-10.15-x86_64-3.7/igraph copying igraph/statistics.py -> build/lib.macosx-10.15-x86_64-3.7/igraph creating build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/structural.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/colortests.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/attributes.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/rng.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/conversion.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/vertexseq.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/init.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/flow.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/games.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/matching.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/generators.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/isomorphism.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/basic.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/utils.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/edgeseq.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/decomposition.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/iterators.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/spectral.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/separators.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/homepage.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/atlas.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/indexing.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/operators.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/layouts.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/cliques.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/foreign.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test copying igraph/test/bipartite.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/test creating build/lib.macosx-10.15-x86_64-3.7/igraph/app copying igraph/app/shell.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/app copying igraph/app/init.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/app creating build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/shapes.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/edge.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/baseclasses.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/graph.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/coord.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/init.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/vertex.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/utils.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/text.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/metamagic.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing copying igraph/drawing/colors.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/drawing creating build/lib.macosx-10.15-x86_64-3.7/igraph/remote copying igraph/remote/init.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/remote copying igraph/remote/nexus.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/remote copying igraph/remote/gephi.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/remote creating build/lib.macosx-10.15-x86_64-3.7/igraph/vendor copying igraph/vendor/texttable.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/vendor copying igraph/vendor/init.py -> build/lib.macosx-10.15-x86_64-3.7/igraph/vendor Fixing build/lib.macosx-10.15-x86_64-3.7/igraph/configuration.py build/lib.macosx-10.15-x86_64-3.7/igraph/clustering.py build/lib.macosx-10.15-x86_64-3.7/igraph/compat.py build/lib.macosx-10.15-x86_64-3.7/igraph/formula.py build/lib.macosx-10.15-x86_64-3.7/igraph/layout.py build/lib.macosx-10.15-x86_64-3.7/igraph/cut.py build/lib.macosx-10.15-x86_64-3.7/igraph/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/matching.py build/lib.macosx-10.15-x86_64-3.7/igraph/summary.py build/lib.macosx-10.15-x86_64-3.7/igraph/datatypes.py build/lib.macosx-10.15-x86_64-3.7/igraph/utils.py build/lib.macosx-10.15-x86_64-3.7/igraph/statistics.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/structural.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/colortests.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/attributes.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/rng.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/conversion.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/vertexseq.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/flow.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/games.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/matching.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/generators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/isomorphism.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/basic.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/utils.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/edgeseq.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/decomposition.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/iterators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/spectral.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/separators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/homepage.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/atlas.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/indexing.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/operators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/layouts.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/cliques.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/foreign.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/bipartite.py build/lib.macosx-10.15-x86_64-3.7/igraph/app/shell.py build/lib.macosx-10.15-x86_64-3.7/igraph/app/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/shapes.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/edge.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/baseclasses.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/graph.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/coord.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/vertex.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/utils.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/text.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/metamagic.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/colors.py build/lib.macosx-10.15-x86_64-3.7/igraph/remote/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/remote/nexus.py build/lib.macosx-10.15-x86_64-3.7/igraph/remote/gephi.py build/lib.macosx-10.15-x86_64-3.7/igraph/vendor/texttable.py build/lib.macosx-10.15-x86_64-3.7/igraph/vendor/init.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma Fixing build/lib.macosx-10.15-x86_64-3.7/igraph/configuration.py build/lib.macosx-10.15-x86_64-3.7/igraph/clustering.py build/lib.macosx-10.15-x86_64-3.7/igraph/compat.py build/lib.macosx-10.15-x86_64-3.7/igraph/formula.py build/lib.macosx-10.15-x86_64-3.7/igraph/layout.py build/lib.macosx-10.15-x86_64-3.7/igraph/cut.py build/lib.macosx-10.15-x86_64-3.7/igraph/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/matching.py build/lib.macosx-10.15-x86_64-3.7/igraph/summary.py build/lib.macosx-10.15-x86_64-3.7/igraph/datatypes.py build/lib.macosx-10.15-x86_64-3.7/igraph/utils.py build/lib.macosx-10.15-x86_64-3.7/igraph/statistics.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/structural.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/colortests.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/attributes.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/rng.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/conversion.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/vertexseq.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/flow.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/games.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/matching.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/generators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/isomorphism.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/basic.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/utils.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/edgeseq.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/decomposition.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/iterators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/spectral.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/separators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/homepage.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/atlas.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/indexing.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/operators.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/layouts.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/cliques.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/foreign.py build/lib.macosx-10.15-x86_64-3.7/igraph/test/bipartite.py build/lib.macosx-10.15-x86_64-3.7/igraph/app/shell.py build/lib.macosx-10.15-x86_64-3.7/igraph/app/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/shapes.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/edge.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/baseclasses.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/graph.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/coord.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/vertex.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/utils.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/text.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/metamagic.py build/lib.macosx-10.15-x86_64-3.7/igraph/drawing/colors.py build/lib.macosx-10.15-x86_64-3.7/igraph/remote/init.py build/lib.macosx-10.15-x86_64-3.7/igraph/remote/nexus.py build/lib.macosx-10.15-x86_64-3.7/igraph/remote/gephi.py build/lib.macosx-10.15-x86_64-3.7/igraph/vendor/texttable.py build/lib.macosx-10.15-x86_64-3.7/igraph/vendor/init.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext Build type: dynamic extension Include path: /usr/local/Cellar/igraph/0.8.0/include/igraph Library path: /usr/local/Cellar/igraph/0.8.0/lib Runtime library path: Linked dynamic libraries: igraph Linked static libraries: Extra compiler options: Extra linker options: building 'igraph._igraph' extension creating build/temp.macosx-10.15-x86_64-3.7 creating build/temp.macosx-10.15-x86_64-3.7/src clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/Cellar/igraph/0.8.0/include/igraph -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/edgeobject.c -o build/temp.macosx-10.15-x86_64-3.7/src/edgeobject.o clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/Cellar/igraph/0.8.0/include/igraph -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/common.c -o build/temp.macosx-10.15-x86_64-3.7/src/common.o clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/Cellar/igraph/0.8.0/include/igraph -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/py2compat.c -o build/temp.macosx-10.15-x86_64-3.7/src/py2compat.o clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I/usr/local/Cellar/igraph/0.8.0/include/igraph -I/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/graphobject.c -o build/temp.macosx-10.15-x86_64-3.7/src/graphobject.o src/graphobject.c:1675:78: error: too few arguments to function call, expected 7, have 5 if (igraph_avg_nearest_neighbor_degree(&self->g, vids, &knn, &knnk, weights)) {


    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_structural.h:113:9: note: 'igraph_avg_nearest_neighbor_degree' declared here
    DECLDIR int igraph_avg_nearest_neighbor_degree(const igraph_t *graph,
            ^
    src/graphobject.c:4824:77: error: too few arguments to function call, expected 6, have 5
      if (igraph_neighborhood(&self->g, &res, vs, (igraph_integer_t) order, mode)) {
          ~~~~~~~~~~~~~~~~~~~                                                   ^
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_neighborhood.h:37:9: note: 'igraph_neighborhood' declared here
    DECLDIR int igraph_neighborhood(const igraph_t *graph, igraph_vector_ptr_t *res,
            ^
    src/graphobject.c:4877:82: error: too few arguments to function call, expected 6, have 5
      if (igraph_neighborhood_size(&self->g, &res, vs, (igraph_integer_t) order, mode)) {
          ~~~~~~~~~~~~~~~~~~~~~~~~                                                   ^
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_neighborhood.h:34:9: note: 'igraph_neighborhood_size' declared here
    DECLDIR int igraph_neighborhood_size(const igraph_t *graph, igraph_vector_t *res,
            ^
    src/graphobject.c:6156:44: error: too few arguments to function call, expected 3, have 2
        ret = igraph_layout_circle(&self->g, &m);
              ~~~~~~~~~~~~~~~~~~~~             ^
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_layout.h:44:9: note: 'igraph_layout_circle' declared here
    DECLDIR int igraph_layout_circle(const igraph_t *graph, igraph_matrix_t *res,
            ^
    src/graphobject.c:6425:37: error: too many arguments to function call, expected 11, have 12
           /*bounds*/ minx, maxx, miny, maxy);
                                        ^~~~
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_layout.h:61:9: note: 'igraph_layout_kamada_kawai' declared here
    DECLDIR int igraph_layout_kamada_kawai(const igraph_t *graph, igraph_matrix_t *res,
            ^
    src/graphobject.c:6429:43: error: too many arguments to function call, expected 13, have 15
           /*bounds*/ minx, maxx, miny, maxy, minz, maxz);
                                              ^~~~~~~~~~
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_layout.h:106:9: note: 'igraph_layout_kamada_kawai_3d' declared here
    DECLDIR int igraph_layout_kamada_kawai_3d(const igraph_t *graph, igraph_matrix_t *res,
            ^
    src/graphobject.c:6661:41: error: too many arguments to function call, expected 11, have 13
             use_seed, weights, minx, maxx, miny, maxy);
                                            ^~~~~~~~~~
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_layout.h:49:9: note: 'igraph_layout_fruchterman_reingold' declared here
    DECLDIR int igraph_layout_fruchterman_reingold(const igraph_t *graph,
            ^
    src/graphobject.c:6665:45: error: too many arguments to function call, expected 12, have 15
           use_seed, weights, minx, maxx, miny, maxy, minz, maxz);
                                                ^~~~~~~~~~~~~~~~
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_layout.h:93:9: note: 'igraph_layout_fruchterman_reingold_3d' declared here
    DECLDIR int igraph_layout_fruchterman_reingold_3d(const igraph_t *graph,
            ^
    src/graphobject.c:8054:62: error: too few arguments to function call, expected 5, have 4
      if (igraph_canonical_permutation(&self->g, &labeling, sh, 0)) {
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~                           ^
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_topology.h:263:9: note: 'igraph_canonical_permutation' declared here
    DECLDIR int igraph_canonical_permutation(const igraph_t *graph, const igraph_vector_int_t *colors, igraph_vector_t *labeling,
            ^
    src/graphobject.c:8177:21: error: too few arguments to function call, expected 10, have 9
          sh1, sh2, 0, 0)) {
                        ^
    /usr/local/Cellar/igraph/0.8.0/include/igraph/igraph_topology.h:265:9: note: 'igraph_isomorphic_bliss' declared here
    DECLDIR int igraph_isomorphic_bliss(const igraph_t *graph1, const igraph_t *graph2,
            ^
    10 errors generated.
    error: command 'clang' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /Users/home/opendata/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-install-fg3snf7r/python-igraph/setup.py'"'"'; __file__='"'"'/private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-install-fg3snf7r/python-igraph/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/gf/v279v4ks7n3bl5xlr3ylsnl40000gn/T/pip-record-obx9enfc/install-record.txt --single-version-externally-managed --compile --install-headers /Users/home/opendata/bin/../include/site/python3.7/python-igraph Check the logs for full command output.`

please help me out.
ntamas commented 4 years ago

igraph in Homebrew has recently been updated to version 0.8. The Python interface on PyPI is for version 0.7.1. You need to install python-igraph from Github until we publish the next version of the Python interface:

pip install -e git+https://github.com/igraph/python-igraph