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igraph / rigraph

igraph R package
https://r.igraph.org
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fatal error: gmp.h: No such file or directory #include <gmp.h> #445

Closed moldach closed 3 years ago

moldach commented 3 years ago

I'm getting a gmp.h error when trying to install igraph on R:

$ install.packages("igraph")
Installing package into ‘/home/mtg/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/igraph_1.2.6.tar.gz'
Content type 'application/x-gzip' length 2715500 bytes (2.6 MB)
==================================================
downloaded 2.6 MB

* installing *source* package ‘igraph’ ...
** package ‘igraph’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for rintf... yes
checking for finite... yes
checking for expm1... yes
checking for rint... yes
checking for log2... yes
checking for logbl... yes
checking for snprintf... yes
checking for log1p... yes
checking for round... yes
checking for fmin... yes
checking for stpcpy... yes
checking how to run the C preprocessor... /home/mtg/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether stpcpy is declared... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking net/if.h usability... yes
checking net/if.h presence... yes
checking for net/if.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking net/if_dl.h usability... no
checking net/if_dl.h presence... no
checking for net/if_dl.h... no
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking for struct sockaddr.sa_len... no
checking for xml2-config... /home/mtg/anaconda3/bin/xml2-config
checking for xmlSAXUserParseFile in -lxml2... yes
checking libxml/parser.h usability... yes
checking libxml/parser.h presence... yes
checking for libxml/parser.h... yes
checking for __gmpz_add in -lgmp... yes
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking for glp_read_mps in -lglpk... no
configure: creating ./config.status
config.status: creating src/Makevars.tmp
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong  -c AMD/Source/amd.f -o AMD/Source/amd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_1.c -o AMD/Source/amd_1.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_2.c -o AMD/Source/amd_2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_aat.c -o AMD/Source/amd_aat.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_control.c -o AMD/Source/amd_control.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_defaults.c -o AMD/Source/amd_defaults.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_dump.c -o AMD/Source/amd_dump.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_global.c -o AMD/Source/amd_global.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_info.c -o AMD/Source/amd_info.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_order.c -o AMD/Source/amd_order.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_post_tree.c -o AMD/Source/amd_post_tree.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_postorder.c -o AMD/Source/amd_postorder.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_preprocess.c -o AMD/Source/amd_preprocess.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c AMD/Source/amd_valid.c -o AMD/Source/amd_valid.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong  -c AMD/Source/amdbar.f -o AMD/Source/amdbar.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Check/cholmod_check.c -o CHOLMOD/Check/cholmod_check.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Check/cholmod_read.c -o CHOLMOD/Check/cholmod_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Check/cholmod_write.c -o CHOLMOD/Check/cholmod_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_amd.c -o CHOLMOD/Cholesky/cholmod_amd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_analyze.c -o CHOLMOD/Cholesky/cholmod_analyze.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_colamd.c -o CHOLMOD/Cholesky/cholmod_colamd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_etree.c -o CHOLMOD/Cholesky/cholmod_etree.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_factorize.c -o CHOLMOD/Cholesky/cholmod_factorize.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_postorder.c -o CHOLMOD/Cholesky/cholmod_postorder.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_rcond.c -o CHOLMOD/Cholesky/cholmod_rcond.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_resymbol.c -o CHOLMOD/Cholesky/cholmod_resymbol.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_rowcolcounts.c -o CHOLMOD/Cholesky/cholmod_rowcolcounts.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_rowfac.c -o CHOLMOD/Cholesky/cholmod_rowfac.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_solve.c -o CHOLMOD/Cholesky/cholmod_solve.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Cholesky/cholmod_spsolve.c -o CHOLMOD/Cholesky/cholmod_spsolve.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_aat.c -o CHOLMOD/Core/cholmod_aat.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_add.c -o CHOLMOD/Core/cholmod_add.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_band.c -o CHOLMOD/Core/cholmod_band.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_change_factor.c -o CHOLMOD/Core/cholmod_change_factor.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_common.c -o CHOLMOD/Core/cholmod_common.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_complex.c -o CHOLMOD/Core/cholmod_complex.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_copy.c -o CHOLMOD/Core/cholmod_copy.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_dense.c -o CHOLMOD/Core/cholmod_dense.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_error.c -o CHOLMOD/Core/cholmod_error.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_factor.c -o CHOLMOD/Core/cholmod_factor.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_memory.c -o CHOLMOD/Core/cholmod_memory.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_sparse.c -o CHOLMOD/Core/cholmod_sparse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_transpose.c -o CHOLMOD/Core/cholmod_transpose.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_triplet.c -o CHOLMOD/Core/cholmod_triplet.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Core/cholmod_version.c -o CHOLMOD/Core/cholmod_version.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_drop.c -o CHOLMOD/MatrixOps/cholmod_drop.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_horzcat.c -o CHOLMOD/MatrixOps/cholmod_horzcat.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_norm.c -o CHOLMOD/MatrixOps/cholmod_norm.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_scale.c -o CHOLMOD/MatrixOps/cholmod_scale.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_sdmult.c -o CHOLMOD/MatrixOps/cholmod_sdmult.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_ssmult.c -o CHOLMOD/MatrixOps/cholmod_ssmult.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_submatrix.c -o CHOLMOD/MatrixOps/cholmod_submatrix.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_symmetry.c -o CHOLMOD/MatrixOps/cholmod_symmetry.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/MatrixOps/cholmod_vertcat.c -o CHOLMOD/MatrixOps/cholmod_vertcat.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Modify/cholmod_rowadd.c -o CHOLMOD/Modify/cholmod_rowadd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Modify/cholmod_rowdel.c -o CHOLMOD/Modify/cholmod_rowdel.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Modify/cholmod_updown.c -o CHOLMOD/Modify/cholmod_updown.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Partition/cholmod_camd.c -o CHOLMOD/Partition/cholmod_camd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Partition/cholmod_ccolamd.c -o CHOLMOD/Partition/cholmod_ccolamd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Partition/cholmod_csymamd.c -o CHOLMOD/Partition/cholmod_csymamd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Partition/cholmod_metis.c -o CHOLMOD/Partition/cholmod_metis.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Partition/cholmod_nesdis.c -o CHOLMOD/Partition/cholmod_nesdis.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Supernodal/cholmod_super_numeric.c -o CHOLMOD/Supernodal/cholmod_super_numeric.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Supernodal/cholmod_super_solve.c -o CHOLMOD/Supernodal/cholmod_super_solve.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c CHOLMOD/Supernodal/cholmod_super_symbolic.c -o CHOLMOD/Supernodal/cholmod_super_symbolic.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c COLAMD/Source/colamd.c -o COLAMD/Source/colamd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c COLAMD/Source/colamd_global.c -o COLAMD/Source/colamd_global.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c DensityGrid.cpp -o DensityGrid.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c DensityGrid_3d.cpp -o DensityGrid_3d.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c NetDataTypes.cpp -o NetDataTypes.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c NetRoutines.cpp -o NetRoutines.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c SuiteSparse_config/SuiteSparse_config.c -o SuiteSparse_config/SuiteSparse_config.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c adjlist.c -o adjlist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c arpack.c -o arpack.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array.c -o array.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c atlas.c -o atlas.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c attributes.c -o attributes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c basic_query.c -o basic_query.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c bfgs.c -o bfgs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c bigint.c -o bigint.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c bignum.c -o bignum.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c bipartite.c -o bipartite.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/home/mtg/anaconda3/include/libxml2 -I/home/mtg/anaconda3/include -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c blas.c -o blas.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG     -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-8T8CYO/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c bliss.cc -o bliss.o
In file included from bliss/graph.hh:39:0,
                 from bliss.cc:20:
bliss/bignum.hh:34:10: fatal error: gmp.h: No such file or directory
 #include <gmp.h>
          ^~~~~~~
compilation terminated.
make: *** [/usr/lib/R/etc/Makeconf:179: bliss.o] Error 1
ERROR: compilation failed for package ‘igraph’
* removing ‘/home/mtg/R/x86_64-pc-linux-gnu-library/4.0/igraph’
Warning in install.packages :
  installation of package ‘igraph’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpNKgcqy/downloaded_packages’
gaborcsardi commented 3 years ago

You need to install the GMP library to compile igraph.

moldach commented 3 years ago

Must have fixed it with sudo apt-get install libgmp3-dev at some point; installation works fine now. Thanks.