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igvteam / igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
347 stars 51 forks source link

Tracks no longer show in html files #101

Closed lauhinojosa closed 2 months ago

lauhinojosa commented 8 months ago

Hello,

Thanks for developing igv-reports.

Tracks do not load on HTML files that were previously working perfectly fine. In fact, none of the HTMLs that I had previously generated can load data.

Is this an issue with the server or has there been a recent change (last couple of days) that affects the behavior? Is someone else experiencing this?

Thank you very much, Laura Hinojosa

jrobinso commented 8 months ago

The data for tracks in an igv-reports html file are internal to the file. Is it possible to share one of the reports? If you send an email to igv-team@broadinstitute.org I can send you a secure dropbox link.

Of particular interest is what version of igv.js the reports are referencing. This will be near the top of the html file.

lauhinojosa commented 8 months ago

Hi Jim, Thank you for your quick reply. The version is 2.9.1.

E-mail sent!

jrobinso commented 8 months ago

OK, got it. Yes that is a problem caused by a change in our hosted genome file that is not compatible with 2.9.1. I will fix it on our end, your reports should start working again shortly.

lauhinojosa commented 8 months ago

Perfect! Thank you very much!

jrobinso commented 8 months ago

OK they should be working again.

jrobinso commented 8 months ago

BTW that's an innovative use of igv-reports, I take it you created a template file for this. We don't really have much insight into how people are using this tool, or if there is even much of a community, so this is nice to see.

lauhinojosa commented 8 months ago

Thank you very much for solving this so quickly! Everything is back to normal!