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igvteam / igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
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Change default track height for tracks supplied via --tracks #109

Closed phillip-richmond-umoja closed 3 months ago

phillip-richmond-umoja commented 7 months ago

Hello!

This is an excellent package that you have created. I have a question about supplying configuration for the tracks via --track-config.

Right now, I'm running igv-reports as such:

    create_report \
    --fasta $genome_fasta \
    --output "GenesOfInterest_${enzyme_name}-sites_igvreport.html" \
    --tracks $genome_gtf $candidate_bed_pass $candidate_bed_fail $encode_cre $annotation_bedgraph \
    --flanking 10 \
    $target_regions

If I want all the tracks to have increased height, from 50 -> 100, is there a directive I can give to the --track-config json to specify this? Or would I need to define all the tracks I intend to show via --track-config, and not pass them via --tracks?

Thanks, Phil

jrobinso commented 3 months ago

Hi, sorry for the long delay, I was pondering this then it fell off my list. There is no global directive for track height, you would need to use --track-config.