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igvteam / igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
350 stars 52 forks source link

Add IGV 'side-by-side' feature please. #52

Closed xiucz closed 2 years ago

xiucz commented 3 years ago

Hi, Thank you for your tools. In my recent fusion gene research, how about add a new feature, which can be visualized side-by-side. image

Best, xiucz

jrobinso commented 3 years ago

This already exists, as your screenshot demonstrates, so I'm not sure what you are asking for.

xiucz commented 3 years ago

@jrobinso Thanks for your quick reply. Yes, we can visualize fusion events in a GUI window manually. But how can I do it using create_report command line in batches?

Best, xiucz

jrobinso commented 3 years ago

Ahh, of course, gotcha. You can't do that currently, its a good suggestion, I will leave this open as a request.

jrobinso commented 2 years ago

@xiucz This is implemented thanks to help from @DevangThakkar . See the README for instructions, you use a "bedpe" file to define the regions instead of a vcf. This will be released in the next week.

jrobinso commented 2 years ago

Released as version 1.5.0