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igvteam / igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
347 stars 51 forks source link

Consider using CRAM format to reduce file size #70

Closed jrobinso closed 1 month ago

jrobinso commented 2 years ago

Consider converting alignments to CRAM format to reduce output file size. See https://github.com/igvteam/igv.js/pull/1548.

jrobinso commented 1 month ago

Too complex to implement in practice, would require the "-T" flag and storing an unknown amount of sequence to decode blocks.