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igvteam / igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MIT License
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fasta unrecognized #93

Closed mzwaig closed 11 months ago

mzwaig commented 1 year ago

Hi,

I'm trying to run create_report but I keep getting the following error when I give it genome fasta.

create_report: error: unrecognized arguments: --fasta /cvmfs/CentOS6/genomes/species/Homo_sapiens.GRCh38/genome/Homo_sapiens.GRCh38.fa

There is a index file in the same folder so I'm not sure why it's not being accepted.

Thanks, Melissa

jrobinso commented 1 year ago

Are you running the latest version? Also, could you post your entire command line here?