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igvteam / igv-webapp

IGV Web App
https://igv.org/app
MIT License
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Genes no showing when loading a genome from json file #301

Closed r78v10a07 closed 3 months ago

r78v10a07 commented 3 months ago

I attached a genome json file that fail to show the genes when clicking a chromosome.

tair10.json

After loading the genomes all chromosomes are shown correctly

Screenshot 2024-08-23 at 6 39 12 PM

Then, clicking on any chromosome (figure show chromosome 3) the genes are not shown

Screenshot 2024-08-23 at 6 39 48 PM

Can you tell me if there is anything wrong with my json format or files?

jrobinso commented 3 months ago

The json is fine. The error is caused by the index, loading the file without the index works. I'm investigating, it could be an igv.js bug, not the index itself.

jrobinso commented 3 months ago

I found this issue, it affects a small number of indexed GFF files, which unfortunately includes yours. I will have a fix soon.

jrobinso commented 3 months ago

This have been fixed in igv-webapp v 2.0.3. The fix is actually in igv.js. (v 3.0.4)