Open matthdsm opened 6 years ago
Hi,
Both the VEP and SNPeff put all of their annotations in the CSQ of ANN info field. Could some type of INFO field parsing voor those fields be implemented so annotations can be viewed in the browser?
Thanks Matthias
xref: igvteam/igv-webapp#58
Could you provide a small sample file?
Sure, Here's a annotated vcf of a Genome in a Bottle sample, chr20. NA12878K12.vcf.gz
For inspiration: https://github.com/hans-vg/jbplugin-varianteffect
Hi,
Both the VEP and SNPeff put all of their annotations in the CSQ of ANN info field. Could some type of INFO field parsing voor those fields be implemented so annotations can be viewed in the browser?
Thanks Matthias
xref: igvteam/igv-webapp#58