Feature: Automated parsing of CSQ/ANN info fields

igvteam / igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

MIT License

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Feature: Automated parsing of CSQ/ANN info fields #1137

Open matthdsm opened 6 years ago

matthdsm commented 6 years ago

Hi,

Both the VEP and SNPeff put all of their annotations in the CSQ of ANN info field. Could some type of INFO field parsing voor those fields be implemented so annotations can be viewed in the browser?

Thanks Matthias

xref: igvteam/igv-webapp#58

jrobinso commented 6 years ago

Could you provide a small sample file?

matthdsm commented 6 years ago

Sure, Here's a annotated vcf of a Genome in a Bottle sample, chr20. NA12878K12.vcf.gz

matthdsm commented 6 years ago

For inspiration: https://github.com/hans-vg/jbplugin-varianteffect