igvteam / igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
https://igv.org
MIT License
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v2.17 in windows can't get read information by left-click #1468

Closed sqwwww closed 10 months ago

sqwwww commented 10 months ago

v2.17 in windows can't get read information by left-click, maybe there was a bug in it? please let me know if there is any information.

jrobinso commented 10 months ago

I can't reproduce your problem, you will have to give us more details.

huangnengCSU commented 10 months ago

Hi. Same problem of v2.17, I can not get the alignment information when left-click one nucleotide of the read. I have tested on MacOS and window11.

To reproduce the problem. First, you show all base of the read. In the previous version, when you click one nucleotide then you can get the alignment information of the read including Read name, Read length, Mapping quality and base quality of the nucleotide as well. In the latest version, when you click the nucleotide, you will get nothing. Even if you get alignment information by chance, the base quality is not in it anymore.

jrobinso commented 10 months ago

Hi, sorry but I still can't reproduce your problem (see screenshot). This might be specific to your dataset. Could you zip and attach your igv.log file? This might give a clue to the problem. You can find it in an "igv" folder in your home directory, the filename is usually igv0.log.

Screen Shot 2024-01-21 at 12 46 36 PM