Open mocherry opened 3 months ago
Please see the user documentation. I don't know what options you have chosen so can't answer the question directly, but you should find the answer in one of the sections on alignments, start here: https://igv.org/doc/desktop/#UserGuide/tracks/alignments/viewing_alignments_basics/
Dear all,
I have a short question about what the colors in alignments mean.![image](https://github.com/igvteam/igv/assets/23337193/c0804d75-5db9-4657-ae47-9439a929bb28)
there are the grey read alignments and the greenish ones. What is the difference.
Help would be greatly appreciated.
Thanks and best, Matthias